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tree-mean-lengths(1) tree-mean-lengths(1)

NAME

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

tree-mean-lengths [OPTIONS] tree file1 [file2 ...]

DESCRIPTION

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

-h, --help
produce help message
-T arg, --tree arg
tree to re-root
--files arg
tree samples to examine
-s arg (=0), --skip arg (=0)
number of tree samples to skip
-u arg, --until arg
Read until this number of trees.
--ignore arg
Comma-separated taxa to remove
--simple
Ignore all branches not in the query tree
-x arg (=1), --subsample arg (=1)
factor by which to sub-sample
--var
report standard deviation of branch lengths instead of mean
--no-node-lengths
ignore branches not in the specified topology
--safe
Don't die if no trees match the topology
--show-node-lengths
Output special format
-V, --verbose
Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.
Feb 2018