NAME¶

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS¶

tree-mean-lengths [OPTIONS] tree file1 [file2 ...]

DESCRIPTION¶

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:¶

-h, --help

produce help message

-T arg, --tree arg

tree to re-root

--files arg

tree samples to examine

-s arg (=0), --skip arg (=0)

number of tree samples to skip

-u arg, --until arg

Read until this number of trees.

--ignore arg

Comma-separated taxa to remove

--simple

Ignore all branches not in the query tree

-x arg (=1), --subsample arg (=1)

factor by which to sub-sample

--var

report standard deviation of branch lengths instead of mean

--no-node-lengths

ignore branches not in the specified topology

--safe

Don't die if no trees match the topology

--show-node-lengths

Output special format

-V, --verbose

Output more log messages on stderr.

REPORTING BUGS:¶

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS¶

Benjamin Redelings.