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tree-mean-lengths(1) tree-mean-lengths(1)

NAME

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

tree-mean-lengths tree-file < in-file

DESCRIPTION

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

-h, --help
produce help message
--tree arg
tree to re-root
-s arg (=0), --skip arg (=0)
number of tree samples to skip
-u arg, --until arg
Read until this number of trees.
--prune arg
Comma-separated taxa to remove
-x arg (=1), --subsample arg (=1)
factor by which to subsample
--var
report standard deviation of branch lengths instead of mean
--no-node-lengths
ignore branches not in the specified topology
--safe
Don't die if no trees match the topology
--drop-partial
Remove partial branches
--seed arg
random seed
-V, --verbose
Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.
Feb 2018