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PERMUTEFLIPIMAGEORIENTATIONAXES(1) User Commands PERMUTEFLIPIMAGEORIENTATIONAXES(1)

NAME

PermuteFlipImageOrientationAxes - part of ANTS registration suite

DESCRIPTION

Usage: PermuteFlipImageOrientationAxes ImageDimension inputImageFile outputImageFile xperm yperm {zperm} xflip yflip {zflip} {FlipAboutOrigin}
for 3D:
PermuteFlipImageOrientationAxes 3 in.nii out.nii 2 0 1 1 1 1
would map z=>x, x=>y, y=>z and flip each for 2D: PermuteFlipImageOrientationAxes 2 in.nii out.nii 1 0 1 0 would map x=>y, y=>x and flip x
0 1 2 for permute factors gives no axis permutation 1 2 0 maps y to x, z to y and x to z the flip values are boolean - 0 1 0 would flip the y-axis only
The FlipAboutOrigin boolean lets you flip about the coordinate set in the origin
September 2017 PermuteFlipImageOrientationAxes 2.1.0