.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH IMAGESETSTATISTICS "1" "September 2017" "ImageSetStatistics 2.1.0" "User Commands"
.SH NAME
ImageSetStatistics \- part of ANTS registration suite
.SH DESCRIPTION
Usage:
ImageSetStatistics ImageDimension controlslist.txt outimage.nii whichstat {roi.nii} {imagelist2forsimilarityweightedstats.txt}
.TP
whichstat = 0:
median,  1:  max prob appearance  , 2: weighted mean appearance ,  3: trimmed mean , 4 : max value , option 5 : similarity\-weighted (must pass imagelist2 as well) else median , option 6 : same as similarity\-weighted option 5 but the label corresponds to the image that provides the best local match ... useful if you want to MRF smooth these indices  , option 7 : similar to 5 but expects the max\-value to be stored in the ROI image and uses it to get the intensity ...
.TP
example:
ImageSetStatistics  3   imagelist.txt  maxvalueimage.nii.gz 4
.IP
similarity weighted \fB\-\-\-\fR pass in a list of similarity images here which will be used to select the best label \fB\-\-\-\fR thus, number of similarity images must match the number of label images .