.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH CLUSTERIMAGESTATISTICS "1" "September 2017" "ClusterImageStatistics 2.1.0" "User Commands"
.SH NAME
ClusterImageStatistics \- part of ANTS registration suite
.SH DESCRIPTION
.IP
Given an ROI and Label Image, find the max and average value
in a value image  where the value > some user\-defined threshold
and the cluster size  is larger than some min size.
.PP
Usage:
.PP
ClusterImageStatistics  ImageDimension ROIMask.ext LabelImage.ext  OutPrefix   MinimumClusterSize  ValueImageThreshold  Image1WithValuesOfInterest.ext ...  ImageNWithValuesOfInterest.ext
.IP
ROIMask.ext \fB\-\-\fR overall region of interest
.TP
LabelImage.ext \fB\-\-\fR labels for the sub\-regions, e.g. Brodmann or just unique labels (see
LabelClustersUniquely )
.TP
OutputPrefix \fB\-\-\fR all output
has this prefix
.IP
MinimumClusterSize \fB\-\-\fR the minimum size of clusters of interest
.IP
ValueImageThreshold \fB\-\-\fR minimum value of interest
.TP
Image*WithValuesOfInterest.ext
\fB\-\-\-\fR  image(s) that define the values you want to measure