NAME¶

Aevol - an in silico experimental evolution platform

SYNOPSIS¶

aevol_misc_extract -h | --help
aevol_misc_extract -V | --version
aevol_misc_extract [-t TIMESTEP] [-S SEQ_FILE] [-T TRIANGLE_FILE] [-U NUM_GU] [-a]

DESCRIPTION¶

Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.

aevol_misc_extract

extracts the genotype and/or data about the phenotype of individuals in the provided population and write them into text files easy to parse with e.g. matlab.

OPTIONS¶

-h, --help

print help, then exit

-V, --version

print version number, then exit

-t TIMESTEP
specify timestep of the individual(s) of interest

-S SEQ_FILE
extract sequences into file SEQ_FILE

-T TRIANGLE_FILE
extract phenotypic data into file TRIANGLE_FILE

-U NUM_GU
only treat genetic unit #NUM_GU
default: treat all genetic units

-a
treat all the individuals
default: treat only the best

SEE ALSO¶

ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run