.\"test with man -l <file>
.TH AEVOL "1" "July 2016" "aevol 5.0" "User Manual"
.SH NAME
Aevol \- an in silico experimental evolution platform
.SH SYNOPSIS
.B aevol_misc_extract \-h
|
.B \-\-help
.br
.B aevol_misc_extract \-V
|
.B \-\-version
.br
.B aevol_misc_extract \fR[\fB\-t\fI TIMESTEP\fR] \fR[\fB\-S\fI SEQ_FILE\fR] \fR[\fB\-T\fI TRIANGLE_FILE\fR] \fR[\fB\-U\fI NUM_GU\fR] \fR[\fB\-a\fR]
.SH DESCRIPTION
.B Aevol
is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.
.TP
.B aevol_misc_extract
extracts the genotype and/or data about the phenotype of individuals in the provided population and write them into text files easy to parse with e.g. matlab.
.SH OPTIONS
.TP
.B \-h, \-\-help
print help, then exit
.TP
.B \-V, \-\-version
print version number, then exit
.HP
.B \-t
.I TIMESTEP
.br
specify timestep of the individual(s) of interest
.HP
.B \-S
.I  SEQ_FILE
.br
extract sequences into file SEQ_FILE
.HP
.B \-T
.I  TRIANGLE_FILE
.br
extract phenotypic data into file TRIANGLE_FILE
.HP
.B \-U
.I  NUM_GU
.br
only treat genetic unit #NUM_GU
.br
default: treat all genetic units
.HP
.B \-a
.br
treat all the individuals
.br
default: treat only the best
.SH "SEE ALSO"
.B ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run