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other versions
- stretch 2.3.1+dfsg-4
- testing 2.4.0+dfsg-11
- stretch-backports 2.4.0+dfsg-11~bpo9+1
- unstable 2.4.0+dfsg-11
YARA_INDEXER(1) | User Commands | YARA_INDEXER(1) |
NAMEΒΆ
yara_indexer - Yara IndexerSYNOPSIS
- yara_indexer [OPTIONS] <REFERENCE FILE>
DESCRIPTION
- Yara - Yet Another Read Aligner.
- See http://www.seqan.de/projects/yara for more information.
- (c) Copyright 2011-2014 by Enrico Siragusa.
- (c) Copyright 2013 by NVIDIA Corporation.
REQUIRED ARGUMENTS
- REFERENCE_FILE INPUT_FILE
- A reference genome file. Valid filetypes are: .sam[.*], .raw[.*], .gbk[.*], .frn[.*], .fq[.*], .fna[.*], .ffn[.*], .fastq[.*], .fasta[.*], .faa[.*], .fa[.*], .embl[.*], and .bam, where * is any of the following extensions: gz, bz2, and bgzf for transparent (de)compression.
OPTIONS
-h, --help
- Display the help message.
--version-check BOOL
- Turn this option off to disable version update notifications of the application. One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1.
--version
- Display version information.
-v, --verbose
- Displays verbose output.
- Output Options:
-o, --output-prefix OUTPUT_PREFIX
- Specify a filename prefix for the reference genome index. Default: use the filename prefix of the reference genome.
-td, --tmp-dir STRING
- Specify a temporary directory where to construct the index. Default: use the output directory.
VERSION
- Last update: yara_indexer version: 0.9.9 [tarball] SeqAn version: 2.3.1
June 2017 | yara_indexer 2.3.1+dfsg-4 |