.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH RABEMA_PREPARE_SAM "1" "June 2017" "rabema_prepare_sam 2.3.1+dfsg-4" "User Commands"
.SH NAME
rabema_prepare_sam \- Prepare SAM For Rabema
.PP
SYNOPSIS
.IP
rabema_prepare_sam \fB\-i\fR IN.sam \fB\-o\fR OUT.sam
.PP
DESCRIPTION
.IP
Prepare SAM file for usage with RABEMA.
.PP
OPTIONS
.HP
\fB\-h\fR, \fB\-\-help\fR
.IP
Display the help message.
.HP
\fB\-\-version\-check\fR BOOL
.IP
Turn this option off to disable version update notifications of the
application. One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO.
Default: 1.
.HP
\fB\-\-version\fR
.IP
Display version information.
.HP
\fB\-i\fR, \fB\-\-in\-file\fR INPUT_FILE
.IP
Path to the input file. Valid filetype is: .sam.
.HP
\fB\-o\fR, \fB\-\-out\-file\fR OUTPUT_FILE
.IP
Path to the output file. Valid filetype is: .sam.
.HP
\fB\-\-dont\-check\-sorting\fR
.IP
Do not check sortedness.
.PP
VERSION
.IP
Last update:
rabema_prepare_sam version: 1.2.8 [tarball]
SeqAn version: 2.3.1