'\" t
.\"     Title: gfadiff
.\"    Author: [see the "AUTHORS" section]
.\" Generator: Asciidoctor 1.5.4
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "GFADIFF" "1" "" "\ \&" "\ \&"
.ie \n(.g .ds Aq \(aq
.el       .ds Aq '
.ss \n[.ss] 0
.nh
.ad l
.de URL
\\$2 \(laURL: \\$1 \(ra\\$3
..
.if \n[.g] .mso www.tmac
.LINKSTYLE blue R < >
.SH "NAME"
gfadiff \- compare two GFA files
.SH "SYNOPSIS"
.sp
\fBgfadiff\fP [\-h] [\-s] [\-l] [\-c] [\-p] [\-i] [\-script] <gfa1> <gfa2>
.SH "DESCRIPTION"
.sp
If a combination of \-h,\-s,\-l,\-c and/or \-p is specified, then
only record of the specified type [h=headers, s=segments,
l=links, c=containments, p=paths] are compared.
(default: \-h \-s \-l \-c \-p)
.SH "OTHER OPTIONS"
.sp
\fB\-i\fP
.RS 4
output message if identical
.RE
.sp
\fB\-script\fP
.RS 4
create Ruby script to transform gfa1 into gfa2
.RE
.SH "SEE ALSO"
.sp
\fBrgfa\-simdebruijn\fP(1), \fBrgfa\-findcrispr\fP(1), \fBrgfa\-mergelinear\fP(1)
.SH "BUGS"
.sp
Please report bugs to the RGFA issue tracker:
.URL "https://github.com/ggonnella/rgfa/issues" "" ""