.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH CRB-BLAST "1" "December 2016" "crb-blast 0.6.8" "User Commands"
.SH NAME
crb-blast \- Conditional Reciprocal Best BLAST
.SH DESCRIPTION
CRB\-Blast v0.6.8 by Chris Boursnell <cmb211@cam.ac.uk>
.PP
Conditional Reciprocal Best BLAST
.PP
USAGE:
crb\-blast <options>
.SS "OPTIONS:"
.TP
\fB\-\-query\fR, \fB\-q\fR <s>:
query fasta file
.TP
\fB\-\-target\fR, \fB\-t\fR <s>:
target fasta file
.TP
\fB\-\-evalue\fR, \fB\-e\fR <f>:
e\-value cut off for BLAST. Format 1e\-5 (default:
1.0e\-05)
.TP
\fB\-\-threads\fR, \fB\-h\fR <i>:
number of threads to run BLAST with (default: 1)
.TP
\fB\-\-output\fR, \fB\-o\fR <s>:
output file as tsv
.TP
\fB\-\-split\fR, \fB\-s\fR:
split the fasta files into chunks and run multiple blast
jobs and then combine them.
.TP
\fB\-\-verbose\fR, \fB\-v\fR:
be verbose
.TP
\fB\-\-version\fR, \fB\-r\fR:
Print version and exit
.TP
\fB\-\-help\fR, \fB\-l\fR:
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