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.\"     Title: reapr-perfectmap
.\"    Author: [see the "AUTHORS" section]
.\" Generator: Asciidoctor 1.5.4
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "REAPR\-PERFECTMAP" "1" "" "\ \&" "\ \&"
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.SH "NAME"
reapr\-perfectmap \- make perfect uniquely mapping plot files
.SH "SYNOPSIS"
.sp
\fBreapr perfectmap\fP <assembly.fa> <reads_1.fastq> <reads_2.fastq> <avginsertsize> <outprefix>
.SH "DESCRIPTION"
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Note: the reads can be gzipped.  If the extension is \(aq.gz\(aq, then they
are assumed to be gzipped and dealt with accordingly (i.e. called something
like <reads_1.fastq.gz> <reads_2.fastq.gz>).
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.B Important
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all reads must be the same length.
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.RE
.SH "SEE ALSO"
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reapr(1)