.\" Copyright (c) 2014 Stijn van Dongen .TH "clm vol" 1 "16 May 2014" "clm vol 14-137" "USER COMMANDS " .po 2m .de ZI .\" Zoem Indent/Itemize macro I. .br 'in +\\$1 .nr xa 0 .nr xa -\\$1 .nr xb \\$1 .nr xb -\\w'\\$2' \h'|\\n(xau'\\$2\h'\\n(xbu'\\ .. .de ZJ .br .\" Zoem Indent/Itemize macro II. 'in +\\$1 'in +\\$2 .nr xa 0 .nr xa -\\$2 .nr xa -\\w'\\$3' .nr xb \\$2 \h'|\\n(xau'\\$3\h'\\n(xbu'\\ .. .if n .ll -2m .am SH .ie n .in 4m .el .in 8m .. .SH NAME clm_vol \- compute volatile nodes from a set of clusterings clmvol is not in actual fact a program\&. This manual page documents the behaviour and options of the clm program when invoked in mode \fIvol\fP\&. The options \fB-h\fP, \fB--apropos\fP, \fB--version\fP, \fB-set\fP, \fB--nop\fP are accessible in all \fBclm\fP modes\&. They are described in the \fBclm\fP manual page\&. .SH SYNOPSIS \fBclm vol\fP \fB[-fraction\fP num (\fInff factor\fP)\fB]\fP \fB[-o\fP fname (\fIoutput file\fP)\fB]\fP + .SH DESCRIPTION \fBclm vol\fP computes a score for each node, which at a minimum is equal to one\&. The output is in the form of a matrix containing a single column\&. The score correlates with what is deemed to be volatile behaviour\&. For all pairs of clusterings the set of all intersections is computed, and these are considered in turn\&. An intersection is deemed to be volatile if the size of the intersection is less than half the size of the smallest of the two clusters\&. In that case, for each node in the intersection its volatility score is incremented by one over the size of the intersection\&. The size comparison can be made more stringent by increasing the \fB-fraction\fP\ \&\fI\fP option, which is by default set to \fC0\&.5\fP\&. Volatility occurs if the size of the intersection is less than \fB\fP times the size of the smallest cluster\&. If the \fB-fraction\fP value is increased all the way up to 1\&.0, the implication is that an intersection is considered volatile unless one of the two clusteres considered is a subset of the other\&. .SH AUTHOR Stijn van Dongen\&. .SH OPTIONS .ZI 2m "\fB-fraction\fP num (\fInff factor\fP)" \& .br See the discussion at \fBDESCRIPTION\fP\&. .in -2m .ZI 2m "\fB-o\fP fname (\fIoutput file\fP)" \& .br .in -2m .SH SEE ALSO \fBmclfamily(7)\fP for an overview of all the documentation and the utilities in the mcl family\&.