.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH MAPSEMBLER2_EXTREMITIES "1" "September 2016" "mapsembler2_extremities 2.2.3+dfsg" "User Commands"
.SH NAME
mapsembler2_extremities \- manual page for mapsembler2_extremities 2.2.3+dfsg
.SH DESCRIPTION
Error : Option '\-\-k' is mandatory
Error : Option '\-\-starters' is mandatory
Error : Option '\-\-reads' is mandatory
Error : Option '\-\-output' is mandatory
USAGE for 'mapsembler2_extremities'
.TP
\fB\-\-k\fR
(1 arg) :    kmer size that will be used for mapsembler2  [default '']
.TP
\fB\-\-starters\fR
(1 arg) :    starters fasta file  [default '']
.TP
\fB\-\-reads\fR
(1 arg) :    reads dataset file name. Several reads sets can be provided, surrounded by "'s and separated by a space (e.g. \fB\-\-reads\fR "reads1.fa reads2.fa")  [default '']
.TP
\fB\-\-output\fR
(1 arg) :    output substarters file name  [default '']
.TP
\fB\-\-min\-solid\-subkmer\fR (1 arg) :
minimim abundance to keep a subkmer  [default '3']
.TP
\fB\-debug\fR
(0 arg) :    debugging
.TP
\fB\-nb\-cores\fR
(1 arg) :    number of cores  [default '0']
.TP
\fB\-verbose\fR
(1 arg) :    verbosity level  [default '1']
.TP
\fB\-help\fR
(0 arg) :    display help about possible options
.SH "SEE ALSO"
The full documentation for
.B mapsembler2_extremities
is maintained as a Texinfo manual.  If the
.B info
and
.B mapsembler2_extremities
programs are properly installed at your site, the command
.IP
.B info mapsembler2_extremities
.PP
should give you access to the complete manual.