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.IX Title "TFBS::Word 3pm"
.TH TFBS::Word 3pm "2016-12-17" "perl v5.24.1" "User Contributed Perl Documentation"
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.SH "NAME"
TFBS::Word \- base class for word\-based patterns
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
TFBS::Word is a base class consisting of universal constructor called by
its subclasses (TFBS::Matrix::*), and word pattern manipulation methods that
are independent of the word type. It is not meant to be instantiated itself.
.SH "FEEDBACK"
.IX Header "FEEDBACK"
Please send bug reports and other comments to the author.
.SH "AUTHOR \- Boris Lenhard"
.IX Header "AUTHOR - Boris Lenhard"
Boris Lenhard <Boris.Lenhard@cgb.ki.se>
.SH "APPENDIX"
.IX Header "APPENDIX"
The rest of the documentation details each of the object
methods. Internal methods are preceded with an underscore.
.SS "new"
.IX Subsection "new"
.SS "word"
.IX Subsection "word"
.SS "validate_word"
.IX Subsection "validate_word"
Required in all subclasses
.SS "length"
.IX Subsection "length"
.SS "search_seq"
.IX Subsection "search_seq"
.SS "search_aln"
.IX Subsection "search_aln"