| GENOME-MUSIC-PLOT-MUTATION-RELATION(1p) | User Contributed Perl Documentation | GENOME-MUSIC-PLOT-MUTATION-RELATION(1p) |
genome music plot mutation-relation¶
NAME¶
genome music plot mutation-relation - Makes plots for results from the mutation-relation toolVERSION¶
This document describes genome music plot mutation-relation version 0.04 (2016-01-01 at 17:57:59)SYNOPSIS¶
genome music plot mutation-relation --input-matrix=? --output-pdf=? [--skip-zero-mut-samples] [--genes-to-plot=?] [--plot-genes-in-order-listed]REQUIRED ARGUMENTS¶
- input-matrix String
- A gene/sample matrix generated by the mutation-relation tool
- output-pdf String
- An output pdf file to draw the plot to
OPTIONAL ARGUMENTS¶
- skip-zero-mut-samples Boolean
- Don't plot samples that have no mutations on any gene being plotted
Default value 'true' if not specified
- noskip-zero-mut-samples Boolean
- Make skip-zero-mut-samples 'false'
- genes-to-plot String
- Comma-separated list of genes to plot (example: DNMT3A,NPM1)
- plot-genes-in-order-listed Boolean
- Plot the genes in the order that they're listed. Default is to plot them
in descending order by number of mutations
Default value 'false' (--noplot-genes-in-order-listed) if not specified
- noplot-genes-in-order-listed Boolean
- Make plot-genes-in-order-listed 'false'
DESCRIPTION¶
Given a matrix generated using "music mutation-relation --mutation-matrix-file", this tool will generate a plot that highlights mutual exclusivity or concurrence between the mutation status of a predefined set of genes.| 2016-01-01 | perl v5.22.1 |