APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new¶
Title : new
Usage : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr);
Function: generates a new Bio::LiveSeq::Translation
Returns : reference to a new object of class Translation
Errorcode -1
Args : reference to an object of class Transcript
get_Transcript¶
Title : valid
Usage : $transcript = $obj->get_Transcript()
Function: retrieves the reference to the object of class Transcript (if any)
attached to a LiveSeq object
Returns : object reference
Args : none
aa_ranges¶
Title : aa_ranges
Usage : @proteinfeatures = $translation->aa_ranges()
Function: to retrieve all the LiveSeq AARange objects attached to a
Translation, usually created out of a SwissProt database entry
crossreferenced from an EMBL CDS feature.
Returns : an array
Args : none