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LAST-DOTPLOT(1) User Commands LAST-DOTPLOT(1)

NAME

last-dotplot - make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format

SYNOPSIS

last-dotplot --help
last-dotplot [options] maf-or-tab-alignments dotplot.png
last-dotplot [options] maf-or-tab-alignments dotplot.gif
...

DESCRIPTION

Draw a dotplot of pair-wise sequence alignments in MAF or tabular format.

OPTIONS

-h, --help
show this help message and exit
-1 PATTERN, --seq1=PATTERN
which sequences to show from the 1st genome
-2 PATTERN, --seq2=PATTERN
which sequences to show from the 2nd genome
-x WIDTH, --width=WIDTH
maximum width in pixels (default: 1000)
-y HEIGHT, --height=HEIGHT
maximum height in pixels (default: 1000)
-f FILE, --fontfile=FILE
TrueType or OpenType font file
-s SIZE, --fontsize=SIZE
TrueType or OpenType font size (default: 11)
-c COLOR, --forwardcolor=COLOR
color for forward alignments (default: red)
-r COLOR, --reversecolor=COLOR
color for reverse alignments (default: blue)
Unsequenced gap options:
--gap1=FILE
read genome1 unsequenced gaps from agp or gap file
--gap2=FILE
read genome2 unsequenced gaps from agp or gap file
--bridged-color=COLOR
color for bridged gaps (default: yellow)
--unbridged-color=COLOR
color for unbridged gaps (default: pink)
January 2017 last-dotplot 830