KMC_TOOLS-COMPACT(1) | KMC_TOOLS-COMPACT(1) |
NAME¶
kmc_tools-compact - remove counters of k-mersSYNOPSIS¶
kmc_tools compact <inputdb> [input_params] <output>DESCRIPTION¶
This command removes counters from the database and stores only k-mers.OPTIONS¶
For each input there are additional parameters:-ci<value>
exclude k-mers occurring less than <value>
times
-cx<value>
exclude k-mers occurring more of than <value>
times
EXAMPLE¶
kmc_tools compact wy_kmc2 -ci3 -cx1000 wy_kmc1
AUTHOR¶
KMC was originally written by:•Sebastian Deorowicz (
•Marek Kokot
•Szymon Grabowski
•Agnieszka Debudaj-Grabysz