'\" t
.\"     Title: kmc_tools-compact
.\"    Author: [see the "AUTHORS" section]
.\" Generator: Asciidoctor 1.5.4
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "KMC_TOOLS\-COMPACT" "1" "" "\ \&" "\ \&"
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.SH "NAME"
kmc_tools\-compact \- remove counters of k\-mers
.SH "SYNOPSIS"
.sp
\fBkmc_tools\fP compact <inputdb> [input_params] <output>
.SH "DESCRIPTION"
.sp
This command removes counters from the database and stores only k\-mers.
.SH "OPTIONS"
.sp
For each input there are additional parameters:
.sp
\fB\-ci<value>\fP
.RS 4
exclude k\-mers occurring less than <value> times
.RE
.sp
\fB\-cx<value>\fP
.RS 4
exclude k\-mers occurring more of than <value> times
.RE
.SH "EXAMPLE"
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.RS 4
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kmc_tools compact wy_kmc2 \-ci3 \-cx1000 wy_kmc1
.fi
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.\}
.SH "AUTHOR"
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KMC was originally written by:
.sp
.RS 4
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.IP \(bu 2.3
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Sebastian Deorowicz (\c
.MTO "sebastian.deorowicz\(atpolsl.pl" "sebastian.deorowicz@polsl.pl" ")"
.RE
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.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
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.IP \(bu 2.3
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Marek Kokot
.RE
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.RS 4
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.IP \(bu 2.3
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Szymon Grabowski
.RE
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.RS 4
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\h'-04'\(bu\h'+03'\c
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.IP \(bu 2.3
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Agnieszka Debudaj\-Grabysz
.RE
.SH "COPYING"
.sp
KMC is a free software distributed under GNU GPL3 licence for academic,
research, and commercial use.