.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH IVA_QC_MAKE_DB "1" "January 2017" "iva_qc_make_db 1.0.8" "User Commands"
.SH NAME
iva_qc_make_db \- make a database as input for iva_qc
.SH DESCRIPTION
usage: iva_qc_make_db [options] <output directory>
.SS "positional arguments:"
.TP
Directory_name
Name of output directory
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-add_to_ref\fR Filename
Filename of Genbank IDs or GI numbers to be added to
database. Format is: whitespace separated list of GI
numbers on each line. One line defines one genome
(e.g. flu is 8 segments, so put 8 GI numbers on one
line for one flu reference)
.TP
\fB\-\-skip_viruses\fR
Do not run kraken\-build \fB\-\-download\-library\fR viruses
when building the database. If this option used, then
\fB\-\-add_to_ref\fR must also be used
.TP
\fB\-\-threads\fR INT
Number of threads to use [1]
.TP
\fB\-\-minimizer_len\fR INT
Number to pass to kraken\-build minimizer_len option
[13]
.TP
\fB\-\-max_db_size\fR INT
Number to pass to kraken\-build max_db_size option [3]
.TP
\fB\-\-verbose\fR
Be verbose
.TP
\fB\-\-version\fR
show program's version number and exit