table of contents
GT-ENCSEQ2SPM(1) | GenomeTools Manual | GT-ENCSEQ2SPM(1) |
NAME¶
gt-encseq2spm - Compute suffix prefix matches from encoded sequence.SYNOPSIS¶
gt encseq2spm [option ...] [file]DESCRIPTION¶
-l [value]specify the minimum length (default: 0)
-parts [value]
specify the number of parts (default: 0)
-memlimit [string]
specify maximal amount of memory to be used during index
construction (in bytes, the keywords MB and GB are allowed)
(default: undefined)
-singlestrand [yes|no]
use only the forward strand of the sequence (default:
no)
-spm [string]
specify output for spms (default: undefined)
-ii [string]
specify the input sequence (default: undefined)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS¶
Report bugs to <gt-users@genometools.org>.01/06/2017 | GenomeTools 1.5.9 |