'\" t
.\" Title: gt-convertseq
.\" Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.79.1
.\" Date: 01/06/2017
.\" Manual: GenomeTools Manual
.\" Source: GenomeTools 1.5.9
.\" Language: English
.\"
.TH "GT\-CONVERTSEQ" "1" "01/06/2017" "GenomeTools 1\&.5\&.9" "GenomeTools Manual"
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.SH "NAME"
gt-convertseq \- Parse and convert sequence file formats (FASTA/FASTQ, GenBank, EMBL)\&.
.SH "SYNOPSIS"
.sp
\fBgt convertseq\fR [options] file [\&...]
.SH "DESCRIPTION"
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-r\fR [\fIyes|no\fR]
.RS 4
reverse complement sequences (default: no)
.RE
.PP
\fB\-showfilelengthvalues\fR [\fIyes|no\fR]
.RS 4
show filelengths (default: no)
.RE
.PP
\fB\-noseq\fR [\fIyes|no\fR]
.RS 4
do not show sequences (default: no)
.RE
.PP
\fB\-fastawidth\fR [\fIvalue\fR]
.RS 4
FASTA output line width, 0 for unlimited (default: 60)
.RE
.PP
\fB\-contractdnawc\fR [\fIyes|no\fR]
.RS 4
replace stretches of DNA wildcards with a single
\fIN\fR
(default: no)
.RE
.PP
\fB\-contractproteinwc\fR [\fIyes|no\fR]
.RS 4
replace stretches of protein wildcards with a single
\fIX\fR
(default: no)
.RE
.PP
\fB\-o\fR [\fIfilename\fR]
.RS 4
redirect output to specified file (default: undefined)
.RE
.PP
\fB\-gzip\fR [\fIyes|no\fR]
.RS 4
write gzip compressed output file (default: no)
.RE
.PP
\fB\-bzip2\fR [\fIyes|no\fR]
.RS 4
write bzip2 compressed output file (default: no)
.RE
.PP
\fB\-force\fR [\fIyes|no\fR]
.RS 4
force writing to output file (default: no)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to \&.