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.\" Title: gt-compreads-refdecompress
.\" Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.79.1
.\" Date: 01/06/2017
.\" Manual: GenomeTools Manual
.\" Source: GenomeTools 1.5.9
.\" Language: English
.\"
.TH "GT\-COMPREADS\-REFDE" "1" "01/06/2017" "GenomeTools 1\&.5\&.9" "GenomeTools Manual"
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.SH "NAME"
gt-compreads-refdecompress \- Decodes a given RCR (Reference Compressed Reads)\&.
.SH "SYNOPSIS"
.sp
\fBgt compreads refdecompress\fR [option \&...] (\-file file)
.SH "DESCRIPTION"
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-qnames\fR [\fIyes|no\fR]
.RS 4
decode read names, default is to just number them (default: no)
.RE
.PP
\fB\-ref\fR [\fIstring\fR]
.RS 4
Index file (generated by the gt encseq tool) for reference genome\&. (default: undefined)
.RE
.PP
\fB\-rcr\fR [\fIstring\fR]
.RS 4
specify base name of file containing RCR\&. (default: undefined)
.RE
.PP
\fB\-name\fR [\fIstring\fR]
.RS 4
specify base name for decoded RCR (suffix will be "\&.rcr\&.decoded") (default: undefined)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to \&.