'\" t
.\" Title: gt-bed_to_gff3
.\" Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.79.1
.\" Date: 01/06/2017
.\" Manual: GenomeTools Manual
.\" Source: GenomeTools 1.5.9
.\" Language: English
.\"
.TH "GT\-BED_TO_GFF3" "1" "01/06/2017" "GenomeTools 1\&.5\&.9" "GenomeTools Manual"
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.SH "NAME"
gt-bed_to_gff3 \- Parse BED file and convert it to GFF3\&.
.SH "SYNOPSIS"
.sp
\fBgt bed_to_gff3\fR [BED_file]
.SH "DESCRIPTION"
.PP
\fB\-featuretype\fR [\fIstring\fR]
.RS 4
Set type of parsed BED features (default: BED_feature)
.RE
.PP
\fB\-thicktype\fR [\fIstring\fR]
.RS 4
Set type of parsed thick BED features (default: BED_thick_feature)
.RE
.PP
\fB\-blocktype\fR [\fIstring\fR]
.RS 4
Set type of parsed BED blocks (default: BED_block)
.RE
.PP
\fB\-o\fR [\fIfilename\fR]
.RS 4
redirect output to specified file (default: undefined)
.RE
.PP
\fB\-gzip\fR [\fIyes|no\fR]
.RS 4
write gzip compressed output file (default: no)
.RE
.PP
\fB\-bzip2\fR [\fIyes|no\fR]
.RS 4
write bzip2 compressed output file (default: no)
.RE
.PP
\fB\-force\fR [\fIyes|no\fR]
.RS 4
force writing to output file (default: no)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to \&.