table of contents
| GAPCLEANER(1) | User Commands | GAPCLEANER(1) |
NAME¶
gapcleaner - Find the most-parsimonious ordering of indelsSYNOPSIS¶
gapcleaner <multi-FASTA or Stockholm alignment>DESCRIPTION¶
gapcleaner from FSA 1.15.9Find the most-parsimonious ordering of indels. Finds the minimal chain decomposition of the POSET of the alignment; this corresponds to minimizing the number of gap-openings across the sequences.
Input protein alignment must be in multi-FASTA or Stockholm format.
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.| December 2015 | gapcleaner 1.15.9 |