.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FASTQ_QUALITY_FILTER "1" "December 2016" "fastq_quality_filter 0.0.14" "User Commands"
.SH NAME
fastq_quality_filter \- Filters sequences based on quality
.SH DESCRIPTION
usage: fastq_quality_filter [\-h] [\-v] [\-q N] [\-p N] [\-z] [\-i INFILE] [\-o OUTFILE]
Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
.TP
[\-h]
= This helpful help screen.
.TP
[\-q N]
= Minimum quality score to keep.
.TP
[\-p N]
= Minimum percent of bases that must have [\-q] quality.
.TP
[\-z]
= Compress output with GZIP.
.TP
[\-i INFILE]
= FASTA/Q input file. default is STDIN.
.IP
[\-o OUTFILE] = FASTA/Q output file. default is STDOUT.
[\-v]         = Verbose \- report number of sequences.
.TP
If [\-o] is specified,
report will be printed to STDOUT.
.IP
If [\-o] is not specified (and output goes to STDOUT),
report will be printed to STDERR.
.SH SEE ALSO
The quality of this automatically generated manpage might be
insufficient.  It is suggested to visit
.IP
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
.P
to get a better layout as well as an overview about connected
FASTX tools.