NAME¶
fastaq_caf_to_fastq - Converts a CAF file to FASTQ format
DESCRIPTION¶
usage: fastaq_caf_to_fastq [options] <infile> <outfile>
Converts CAF file to FASTQ format
positional arguments:¶
- infile
- Name of input CAF file.
- outfile
- Name of output FASTQ file
optional arguments:¶
- -h, --help
- show this help message and exit
- -c, --clip
- Use clipping info to clip reads, if present in the input CAF file (as
lines of the form "Clipping QUAL start end"). Default is to not
clip
- -l INT, --min_length INT
- Minimum length of sequence to output [1]
