STRETCHER(1e) | EMBOSS Manual for Debian | STRETCHER(1e) |
NAME¶
stretcher - Needleman-Wunsch rapid global alignment of two sequencesSYNOPSIS¶
stretcher -asequence sequence -bsequence sequence [-datafile matrix] [-gapopen integer] [-gapextend integer] -outfile align
stretcher -help
DESCRIPTION¶
stretcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Global" command group(s).OPTIONS¶
Input section¶
-asequence sequence-bsequence sequence
-datafile matrix
This is the scoring matrix file used when comparing
sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file
'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
directory of the EMBOSS installation.
Additional section¶
-gapopen integerDefault value: @($(acdprotein)? 12 : 16)
-gapextend integer
Default value: @($(acdprotein)? 2 : 4)
Output section¶
-outfile alignBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
stretcher is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |