EINVERTED(1e) | EMBOSS Manual for Debian | EINVERTED(1e) |
NAME¶
einverted - Finds inverted repeats in nucleotide sequencesSYNOPSIS¶
einverted -sequence seqall -gap integer -threshold integer -match integer -mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout
einverted -help
DESCRIPTION¶
einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).OPTIONS¶
Input section¶
-sequence seqallRequired section¶
-gap integerDefault value: 12
-threshold integer
Default value: 50
-match integer
Default value: 3
-mismatch integer
Default value: -4
Additional section¶
-maxrepeat integerMaximum separation between the start of repeat and the
end of the inverted repeat. Default value: 2000
Output section¶
-outfile outfile-outseq seqout
The sequence of the inverted repeat regions without gap
characters.
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
einverted is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |