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DBIBLAST(1e) EMBOSS Manual for Debian DBIBLAST(1e)

NAME

dbiblast - Index a BLAST database

SYNOPSIS

dbiblast -dbname string -directory directory -filenames string -release string -date string -seqtype list -blastversion  list -fields  list -exclude string -sortoptions  string -maxindex  integer -systemsort  boolean -cleanup  boolean -sourcefile  boolean -outfile  outfile -indexoutdir  outdir

dbiblast -help

DESCRIPTION

dbiblast is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).

OPTIONS

Input section

-dbname string

-directory directory

Default value: .

-filenames string

Default value: $(dbname)

Required section

-release string
Default value: 0.0

-date string

Default value: 00/00/00

-seqtype list

Default value: unknown

-blastversion list

Default value: unknown

Advanced section

-fields list
Default value: acc

-exclude string

-sortoptions string

Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1

-maxindex integer

-systemsort boolean

Default value: Y

-cleanup boolean

Default value: Y

-sourcefile boolean

Output section

-outfile outfile

-indexoutdir outdir

Default value: .

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

dbiblast is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0