NAME¶

SYNOPSIS¶

DESCRIPTION¶

OPTIONS¶

--keep-temp <str>

If ´no´, temporary files are deleted. (str; default: ´no´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.keep-temp [default = no].

--debug-level <str>

Additional xshooter debug level. One of ´none´, ´low´, ´medium´, ´high´ (str; default: ´none´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.debug-level [default = none].

--time-stamp <bool>

Add timestamp to product file name. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.time-stamp [default = False].

--decode-bp <long>

Integer representation of the bits to be considered bad when decoding the bad pixel mask pixel values. Most frequent codes relevant for the user: 0: good pixel, 8: pick-up noise, 16: cosmic-ray removed, 32: cosmic-ray unremoved, 128: calibration file defect, 256: hot pixel, 512: dark pixel, 4096: A/D converted saturation, 32768: non linear pixel, 1048576: extrapolated flux in NIR, 4194304: Interpolated flux during extraction. (long; default: 2144337919). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.decode-bp [default = 2144337919].

--pre-overscan-corr <long>

pre-overscan correction.0: no correction1: mean overscan correction2: mean prescan correction3: (mean pre+mean overscan)/2 correction (long; default: 1). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.pre-overscan-corr [default = 1].

--stack-method <str>

Method used to build master frame. (str; default: ´median´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.stack-method [default = median].

--klow <float>

Kappa used to clip low level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.klow [default = 5.0].

--khigh <float>

Kappa used to clip high level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.khigh [default = 5.0].

--crh-clip-kappa <float>

Kappa value in sigma clipping during CRH rejection using multiple frames (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.crh-clip-kappa [default = 5.0].

--crh-clip-niter <long>

Number of iterations in sigma clipping during CRH rejection using multiple frames (long; default: 5). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.crh-clip-niter [default = 5].

--crh-clip-frac <float>

Minimal ratio of points accepted / total in sigma clipping during CRH rejection using multiple frames (float; default: 0.7). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.crh-clip-frac [default = 0.7].

--removecrhsingle-sigmalim <float>

Poisson fluctuation threshold to flag CRHs (see van Dokkum, PASP,113,2001,p1420-27) (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.removecrhsingle-sigmalim [default = 5.0].

--removecrhsingle-flim <float>

Minimum contrast between the Laplacian image and the fine structure image that a point must have to be flagged as CRH. (see van Dokkum, PASP,113,2001,p1420-27) (float; default: 2.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.removecrhsingle-flim [default = 2.0].

--removecrhsingle-niter <long>

Max number of iterations (long; default: 4). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.removecrhsingle-niter [default = 4].

--rectify-kernel <str>

Name of the Interpolation Kernel Used. Possible values are: tanh, sinc, sinc2, lanczos, hamming, hann. (str; default: ´tanh´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.rectify-kernel [default = tanh].

--rectify-radius <float>

Rectify Interpolation radius [bin units]. (float; default: 2.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.rectify-radius [default = 2.0].

--rectify-bin-lambda <float>

Wavelength step in the output spectrum [nm] (float; default: -1.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.rectify-bin-lambda [default = -1.0].

--rectify-bin-slit <float>

Spatial step along the slit in the output spectrum [arcsec] (float; default: -1.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.rectify-bin-slit [default = -1.0].

--localize-method <str>

Localization method (MANUAL, MAXIMUM, GAUSSIAN) used to detect the object centroid and height on the slit (str; default: ´MANUAL´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-method [default = MANUAL].

--localize-chunk-nb <long>

Number of chunks in the full spectrum to localize the object (long; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-chunk-nb [default = 10].

--localize-thresh <float>

Threshold relative to the peak intensity below which the edges of the object are detected for MAXIMUM localization (float; default: 0.1). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-thresh [default = 0.1].

--localize-deg-lambda <long>

Degree in lambda in the localization polynomial expression slit=f(lambda), used only for MAXIMUM and GAUSSIAN (long; default: 0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-deg-lambda [default = 0].

--localize-slit-position <float>

Object position on the slit for MANUAL localization [arcsec] (float; default: 0.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-slit-position [default = 0.0].

--localize-slit-hheight <float>

Object half height on the slit for MANUAL localization [arcsec] (float; default: 2.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-slit-hheight [default = 2.0].

--localize-kappa <float>

Kappa value for sigma clipping in the localization polynomial fit (float; default: 3.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-kappa [default = 3.0].

--localize-niter <long>

Number of iterations for sigma clipping in the localization polynomial fit (long; default: 3). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-niter [default = 3].

--localize-use-skymask <bool>

TRUE if we want to mask sky lines using SKY_LINE_LIST file. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.localize-use-skymask [default = False].

--compute-map <bool>

if TRUE recompute (wave and slit) maps from the dispersion solution. If sky-subtract is set to TRUE this must be set to TRUE. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.compute-map [default = False].

--trace-obj <bool>

if TRUE trace object position on each IFU slice. In this case order TAB edges is required (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.trace-obj [default = False].

--check-afc <bool>

Input AFC corrected model/wave solution and science frame check. If TRUE the recipe verify that the input mode/wave solution is AFC corrected, its INS.OPTIi.NAME is ´Pin_0.5 ´, and its OBS.ID and OBS.TARG.NAME values matches with the corresponding values of the science frame. (bool; default: True). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.check-afc [default = True].

--cut-uvb-spectrum <bool>

TRUE if recipe cuts the UVB spectrum at 556 nm (dichroich) (bool; default: True). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset.cut-uvb-spectrum [default = True].

Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.

SEE ALSO¶

ftp://ftp.eso.org/pub/dfs/pipelines/xshoo/xshoo-pipeline-manual-12.1.pdf

An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/.

Basic documentation about the EsoRex program can be found at the esorex (1) man page.

It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information.

The other recipes of the xshoo pipeline are xsh_2dmap(7), xsh_cfg_recover(7), xsh_flexcomp(7), xsh_geom_ifu(7), xsh_lingain(7), xsh_mbias(7), xsh_mdark(7), xsh_mflat(7), xsh_orderpos(7), xsh_predict(7), xsh_respon_slit_nod(7), xsh_respon_slit_offset(7), xsh_respon_slit_stare(7), xsh_scired_ifu_offset_drl(7), xsh_scired_ifu_stare(7), xsh_scired_ifu_stare_drl(7), xsh_scired_slit_nod(7), xsh_scired_slit_offset(7), xsh_scired_slit_stare(7), xsh_util_physmod(7), xsh_wavecal(7)

VERSION¶

AUTHOR¶

BUG REPORTS¶

LICENSE¶

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA