.TH KMOS_EXTRACT_SPEC "7" "1.4.0" "kmos_extract_spec" "kmos recipes" .SH NAME kmos_extract_spec \- Extract a spectrum from a cube .SH SYNOPSIS esorex .B kmos_extract_spec [OPTIONS] FILE.sof .SH DESCRIPTION This recipe extracts a spectrum from a datacube. The datacube is with or without noise). The output will be a similarly formatted FITS file. .PP Input files: DO KMOS category Type Explanation Required #Frames \-\-\-\-\-\-\-\- \-\-\-\-\- \-\-\-\-\-\-\-\-\-\-\- \-\-\-\-\-\-\-\- \-\-\-\-\-\-\- F3I The datacubes Y 1 F2I The mask N 0,1 Output files: DO KMOS category Type Explanation \-\-\-\-\-\-\-\- \-\-\-\-\- \-\-\-\-\-\-\-\-\-\-\- EXTRACT_SPEC F1I Extracted spectrum EXTRACT_SPEC_MASK F2I (optional, if \-\-save_mask=true and \-\-mask_method=\'optimal\': The calculated mask) .SH OPTIONS .TP \fB\-\-mask_method\fR \fI\fR Method used : mask, integrated or optimal (str; default: \'integrated\'). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.mask_method\fR [default = \fIintegrated\fR]. .TP \fB\-\-centre\fR \fI\fR The centre of the circular mask (pixel) (str; default: \'7.5,7.5\'). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.centre\fR [default = \fI7.5,7.5\fR]. .TP \fB\-\-radius\fR \fI\fR The radius of the circular mask (pixel) (float; default: 3.0). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.radius\fR [default = \fI3.0\fR]. .TP \fB\-\-save_mask\fR \fI\fR Flag to save the mask (bool; default: False). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.save_mask\fR [default = \fIFalse\fR]. .TP \fB\-\-cmethod\fR \fI\fR Apply "average", "median", "sum", "min_max." or "ksigma". (str; default: \'ksigma\'). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.cmethod\fR [default = \fIksigma\fR]. .TP \fB\-\-cpos_rej\fR \fI\fR The positive rejection threshold for kappa\-sigma\-clipping (sigma). (float; default: 3.0). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.cpos_rej\fR [default = \fI3.0\fR]. .TP \fB\-\-cneg_rej\fR \fI\fR The negative rejection threshold for kappa\-sigma\-clipping (sigma). (float; default: 3.0). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.cneg_rej\fR [default = \fI3.0\fR]. .TP \fB\-\-citer\fR \fI\fR The number of iterations for kappa\-sigma\-clipping. (long; default: 3). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.citer\fR [default = \fI3\fR]. .TP \fB\-\-cmax\fR \fI\fR The number of maximum pixel values to clip with min/max\-clipping. (long; default: 1). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.cmax\fR [default = \fI1\fR]. .TP \fB\-\-cmin\fR \fI\fR The number of minimum pixel values to clip with min/max\-clipping. (long; default: 1). The full name of this option for the EsoRex configuration file is \fBkmos.kmos_extract_spec.cmin\fR [default = \fI1\fR]. .PP Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex \-\-help' command. .SH SEE ALSO The full documentation for the kmos pipeline can be downloaded as a PDF file using the following URL: .IP .B ftp://ftp.eso.org/pub/dfs/pipelines/kmos/kmos\-pipeline\-manual\-2.9.pdf .PP An overview over the existing ESO pipelines can be found on the web page \fBhttp://www.eso.org/sci/software/pipelines/\fR. .PP Basic documentation about the EsoRex program can be found at the esorex (1) man page. .PP It is possible to call the pipelines from python using the python\-cpl package. See \fBhttp://packages.python.org/python\-cpl/index.html\fR for further information. .PP The other recipes of the kmos pipeline are .IR kmo_arithmetic (7), .IR kmo_copy (7), .IR kmo_fit_profile (7), .IR kmo_fits_strip (7), .IR kmo_illumination_flat (7), .IR kmo_make_image (7), .IR kmo_noise_map (7), .IR kmo_rotate (7), .IR kmo_shift (7), .IR kmo_sky_mask (7), .IR kmo_stats (7), .IR kmos_combine (7), .IR kmos_dark (7), .IR kmos_flat (7), .IR kmos_gen_reflines (7), .IR kmos_illumination (7), .IR kmos_reconstruct (7), .IR kmos_sci_red (7), .IR kmos_sky_tweak (7), .IR kmos_std_star (7), .IR kmos_test (7), .IR kmos_wave_cal (7) .SH VERSION kmos_extract_spec 1.4.0 .SH AUTHOR Alex Agudo Berbel, Y. Jung .SH BUG REPORTS Please report any problems to usd\-help@eso.org. Alternatively, you may send a report to the ESO User Support Department . .SH LICENSE This file is part of the CRIRES Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111\-1307 USA