table of contents
other versions
- stretch 3.2.3+dfsg-1
CONSENSUSFINDER(1) | CONSENSUSFINDER(1) |
NAME¶
consensusfinder - consensus finderSYNOPSIS¶
consensusFinder input_fasta_file [options]OPTIONS¶
-lpattern length
-p
p-value for finding the significant strings
-d
delta to find the relevant strings
-s
starting position
-e
ending position
-m
no. of mismatches to consider while finding
neighbours
-c
string to consider for analysis
-n
specify the number of consensus patterns to store
-t
print the histogram