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IMAGESETSTATISTICS(1) |
User Commands |
IMAGESETSTATISTICS(1) |
NAME¶
ImageSetStatistics - part of ANTS registration suite
DESCRIPTION¶
Usage: ImageSetStatistics ImageDimension controlslist.txt outimage.nii whichstat
{roi.nii} {imagelist2forsimilarityweightedstats.txt}
- whichstat = 0:
- median, 1: max prob appearance , 2: weighted mean appearance , 3: trimmed
mean , 4 : max value , option 5 : similarity-weighted (must pass
imagelist2 as well) else median , option 6 : same as similarity-weighted
option 5 but the label corresponds to the image that provides the best
local match ... useful if you want to MRF smooth these indices , option 7
: similar to 5 but expects the max-value to be stored in the ROI image and
uses it to get the intensity ...
- example:
- ImageSetStatistics 3 imagelist.txt maxvalueimage.nii.gz 4
- similarity weighted --- pass in a list of similarity images here
which will be used to select the best label --- thus, number of
similarity images must match the number of label images .