.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH XTRACTORE "1" "January 2016" "xtractore 0.15.1" "User Commands"
.SH NAME
xtractore \- extract sequences corresponding to annotated features from the given sequence file
.SH SYNOPSIS
.B xtractore
[\fI\,options\/\fR] \fI\,features.gff3 sequences.fasta\/\fR
.SH DESCRIPTION
Options:
.TP
\fB\-d\fR|\-\-debug
print debugging output
.TP
\fB\-h\fR|\-\-help
print this help message and exit
.TP
\fB\-i\fR|\-\-idfile: FILE
file containing a list of feature IDs (1 per line
with no spaces); if provided, only features with
IDs in this file will be extracted
.TP
\fB\-o\fR|\-\-outfile: FILE
file to which output sequences will be written;
default is terminal (stdout)
.TP
\fB\-t\fR|\-\-type: STRING
feature type to extract; can be used multiple
times to extract features of multiple types
.TP
\fB\-v\fR|\-\-version
print version number and exit
.TP
\fB\-V\fR|\-\-verbose
print verbose warning and error messages
.TP
\fB\-w\fR|\-\-width: INT
width of each line of sequence in the Fasta
output; default is 80; set to 0 for no
formatting