other versions
- testing 3.0.6+dfsg-1+b1
- stretch-backports 3.0.6+dfsg-1~bpo9+1
- unstable 3.0.6+dfsg-1+b1
Algorithm::HMM::Report(3pm) | User Contributed Perl Documentation | Algorithm::HMM::Report(3pm) |
NAME¶
Algorithm::HMM::Report - Report object for the Algorithm::HMM package.DESCRIPTION¶
The Algorithm::HMM::Report object is returned by the Algorithm::HMM search method. It contains the sets of global and domain hits returned by the model.SYNOPSIS¶
# Search the HMM model. An Algorithm::HMM::Report object is returned. my $rep = $hmm->search("AAIELKBPOWELKQJPASDLKJIGE"); # Get all the global hits from the report object. my @ghits = $rep->global_hits(); # Get all the domain hits from the report object. my @dhits = $rep->domain_hits();
METHODS¶
my @ghits = $rep->global_hits(); my @dhits = $rep->domain_hits();
The global_hits() and domain_hits() methods return lists of Algorithm::HMM::Hit::Global and Algorithm::HMM::Hit::Domain objects respectively. A global hit is a match across the entire model, while a domain hit is a match on a smaller subsequence of the model.
AUTHOR¶
The Algorithm::HMM package was originally written by Cory Spencer <cspencer@sfu.ca> of the Simon Fraser University Brinkman Laboratory. It is currently maintained by Matthew Laird <matt@brinkman.mbb.sfu.ca>.SEE ALSO¶
Algorithm::HMM, Algorithm::HMM::Hit::Global, Algorithm::HMM::Hit::Domain2018-10-22 | perl v5.24.1 |