Manpages of src:bioperl in Debian jessie

• Bio::Align::AlignI(3pm)
• Bio::Align::DNAStatistics(3pm)
• Bio::Align::Graphics(3pm)
• Bio::Align::PairwiseStatistics(3pm)
• Bio::Align::ProteinStatistics(3pm)
• Bio::Align::StatisticsI(3pm)
• Bio::Align::Utilities(3pm)
• Bio::AlignIO(3pm)
• Bio::AlignIO::Handler::GenericAlignHandler(3pm)
• Bio::AlignIO::arp(3pm)
• Bio::AlignIO::bl2seq(3pm)
• Bio::AlignIO::clustalw(3pm)
• Bio::AlignIO::emboss(3pm)
• Bio::AlignIO::fasta(3pm)
• Bio::AlignIO::largemultifasta(3pm)
• Bio::AlignIO::maf(3pm)
• Bio::AlignIO::mase(3pm)
• Bio::AlignIO::mega(3pm)
• Bio::AlignIO::meme(3pm)
• Bio::AlignIO::metafasta(3pm)
• Bio::AlignIO::msf(3pm)
• Bio::AlignIO::nexml(3pm)
• Bio::AlignIO::nexus(3pm)
• Bio::AlignIO::pfam(3pm)
• Bio::AlignIO::phylip(3pm)
• Bio::AlignIO::po(3pm)
• Bio::AlignIO::proda(3pm)
• Bio::AlignIO::prodom(3pm)
• Bio::AlignIO::psi(3pm)
• Bio::AlignIO::selex(3pm)
• Bio::AlignIO::stockholm(3pm)
• Bio::AlignIO::xmfa(3pm)
• Bio::AnalysisI(3pm)
• Bio::AnalysisParserI(3pm)
• Bio::AnalysisResultI(3pm)
• Bio::AnnotatableI(3pm)
• Bio::Annotation::AnnotationFactory(3pm)
• Bio::Annotation::Collection(3pm)
• Bio::Annotation::Comment(3pm)
• Bio::Annotation::DBLink(3pm)
• Bio::Annotation::OntologyTerm(3pm)
• Bio::Annotation::Reference(3pm)
• Bio::Annotation::Relation(3pm)
• Bio::Annotation::SimpleValue(3pm)
• Bio::Annotation::StructuredValue(3pm)
• Bio::Annotation::TagTree(3pm)
• Bio::Annotation::Target(3pm)
• Bio::Annotation::Tree(3pm)
• Bio::Annotation::TypeManager(3pm)
• Bio::AnnotationCollectionI(3pm)
• Bio::AnnotationI(3pm)
• Bio::Assembly::Contig(3pm)
• Bio::Assembly::ContigAnalysis(3pm)
• Bio::Assembly::IO(3pm)
• Bio::Assembly::IO::ace(3pm)
• Bio::Assembly::IO::bowtie(3pm)
• Bio::Assembly::IO::maq(3pm)
• Bio::Assembly::IO::phrap(3pm)
• Bio::Assembly::IO::sam(3pm)
• Bio::Assembly::IO::tigr(3pm)
• Bio::Assembly::Scaffold(3pm)
• Bio::Assembly::ScaffoldI(3pm)
• Bio::Assembly::Singlet(3pm)
• Bio::Assembly::Tools::ContigSpectrum(3pm)
• Bio::Cluster::ClusterFactory(3pm)
• Bio::Cluster::FamilyI(3pm)
• Bio::Cluster::SequenceFamily(3pm)
• Bio::Cluster::UniGene(3pm)
• Bio::Cluster::UniGeneI(3pm)
• Bio::ClusterI(3pm)
• Bio::ClusterIO(3pm)
• Bio::ClusterIO::dbsnp(3pm)
• Bio::ClusterIO::unigene(3pm)
• Bio::CodonUsage::IO(3pm)
• Bio::CodonUsage::Table(3pm)
• Bio::Coordinate::Chain(3pm)
• Bio::Coordinate::Collection(3pm)
• Bio::Coordinate::ExtrapolatingPair(3pm)
• Bio::Coordinate::GeneMapper(3pm)
• Bio::Coordinate::Graph(3pm)
• Bio::Coordinate::MapperI(3pm)
• Bio::Coordinate::Pair(3pm)
• Bio::Coordinate::Result(3pm)
• Bio::Coordinate::Result::Gap(3pm)
• Bio::Coordinate::Result::Match(3pm)
• Bio::Coordinate::ResultI(3pm)
• Bio::Coordinate::Utils(3pm)
• Bio::DB::Ace(3pm)
• Bio::DB::BioFetch(3pm)
• Bio::DB::CUTG(3pm)
• Bio::DB::DBFetch(3pm)
• Bio::DB::EMBL(3pm)
• Bio::DB::EntrezGene(3pm)
• Bio::DB::Expression(3pm)
• Bio::DB::Expression::geo(3pm)
• Bio::DB::Failover(3pm)
• Bio::DB::Fasta(3pm)
• Bio::DB::FileCache(3pm)
• Bio::DB::Flat(3pm)
• Bio::DB::Flat::BDB(3pm)
• Bio::DB::Flat::BDB::embl(3pm)
• Bio::DB::Flat::BDB::fasta(3pm)
• Bio::DB::Flat::BDB::genbank(3pm)
• Bio::DB::Flat::BDB::swiss(3pm)
• Bio::DB::Flat::BinarySearch(3pm)
• Bio::DB::GFF(3pm)
• Bio::DB::GFF::Adaptor::ace(3pm)
• Bio::DB::GFF::Adaptor::berkeleydb(3pm)
• Bio::DB::GFF::Adaptor::berkeleydb::iterator(3pm)
• Bio::DB::GFF::Adaptor::biofetch(3pm)
• Bio::DB::GFF::Adaptor::biofetch_oracle(3pm)
• Bio::DB::GFF::Adaptor::dbi(3pm)
• Bio::DB::GFF::Adaptor::dbi::caching_handle(3pm)
• Bio::DB::GFF::Adaptor::dbi::iterator(3pm)
• Bio::DB::GFF::Adaptor::dbi::mysql(3pm)
• Bio::DB::GFF::Adaptor::dbi::mysqlace(3pm)
• Bio::DB::GFF::Adaptor::dbi::mysqlcmap(3pm)
• Bio::DB::GFF::Adaptor::dbi::mysqlopt(3pm)
• Bio::DB::GFF::Adaptor::dbi::oracle(3pm)
• Bio::DB::GFF::Adaptor::dbi::oracleace(3pm)
• Bio::DB::GFF::Adaptor::dbi::pg(3pm)
• Bio::DB::GFF::Adaptor::dbi::pg_fts(3pm)
• Bio::DB::GFF::Adaptor::memory(3pm)
• Bio::DB::GFF::Adaptor::memory::feature_serializer(3pm)
• Bio::DB::GFF::Adaptor::memory::iterator(3pm)
• Bio::DB::GFF::Aggregator(3pm)
• Bio::DB::GFF::Aggregator::alignment(3pm)
• Bio::DB::GFF::Aggregator::clone(3pm)
• Bio::DB::GFF::Aggregator::coding(3pm)
• Bio::DB::GFF::Aggregator::gene(3pm)
• Bio::DB::GFF::Aggregator::match(3pm)
• Bio::DB::GFF::Aggregator::none(3pm)
• Bio::DB::GFF::Aggregator::orf(3pm)
• Bio::DB::GFF::Aggregator::processed_transcript(3pm)
• Bio::DB::GFF::Aggregator::so_transcript(3pm)
• Bio::DB::GFF::Aggregator::transcript(3pm)
• Bio::DB::GFF::Aggregator::ucsc_acembly(3pm)
• Bio::DB::GFF::Aggregator::ucsc_ensgene(3pm)
• Bio::DB::GFF::Aggregator::ucsc_genscan(3pm)
• Bio::DB::GFF::Aggregator::ucsc_refgene(3pm)
• Bio::DB::GFF::Aggregator::ucsc_sanger22(3pm)
• Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo(3pm)
• Bio::DB::GFF::Aggregator::ucsc_softberry(3pm)
• Bio::DB::GFF::Aggregator::ucsc_twinscan(3pm)
• Bio::DB::GFF::Aggregator::ucsc_unigene(3pm)
• Bio::DB::GFF::Featname(3pm)
• Bio::DB::GFF::Feature(3pm)
• Bio::DB::GFF::Homol(3pm)
• Bio::DB::GFF::RelSegment(3pm)
• Bio::DB::GFF::Segment(3pm)
• Bio::DB::GFF::Typename(3pm)
• Bio::DB::GFF::Util::Binning(3pm)
• Bio::DB::GFF::Util::Rearrange(3pm)
• Bio::DB::GenBank(3pm)
• Bio::DB::GenPept(3pm)
• Bio::DB::GenericWebAgent(3pm)
• Bio::DB::HIV(3pm)
• Bio::DB::HIV::HIVAnnotProcessor(3pm)
• Bio::DB::HIV::HIVQueryHelper(3pm)
• Bio::DB::InMemoryCache(3pm)
• Bio::DB::IndexedBase(3pm)
• Bio::DB::LocationI(3pm)
• Bio::DB::MeSH(3pm)
• Bio::DB::NCBIHelper(3pm)
• Bio::DB::Qual(3pm)
• Bio::DB::Query::GenBank(3pm)
• Bio::DB::Query::HIVQuery(3pm)
• Bio::DB::Query::WebQuery(3pm)
• Bio::DB::QueryI(3pm)
• Bio::DB::RandomAccessI(3pm)
• Bio::DB::RefSeq(3pm)
• Bio::DB::ReferenceI(3pm)
• Bio::DB::Registry(3pm)
• Bio::DB::SeqFeature(3pm)
• Bio::DB::SeqFeature::NormalizedFeature(3pm)
• Bio::DB::SeqFeature::NormalizedFeatureI(3pm)
• Bio::DB::SeqFeature::NormalizedTableFeatureI(3pm)
• Bio::DB::SeqFeature::Segment(3pm)
• Bio::DB::SeqFeature::Store(3pm)
• Bio::DB::SeqFeature::Store::DBI::Iterator(3pm)
• Bio::DB::SeqFeature::Store::DBI::Pg(3pm)
• Bio::DB::SeqFeature::Store::DBI::SQLite(3pm)
• Bio::DB::SeqFeature::Store::DBI::mysql(3pm)
• Bio::DB::SeqFeature::Store::FeatureFileLoader(3pm)
• Bio::DB::SeqFeature::Store::GFF2Loader(3pm)
• Bio::DB::SeqFeature::Store::GFF3Loader(3pm)
• Bio::DB::SeqFeature::Store::LoadHelper(3pm)
• Bio::DB::SeqFeature::Store::Loader(3pm)
• Bio::DB::SeqFeature::Store::bdb(3pm)
• Bio::DB::SeqFeature::Store::berkeleydb(3pm)
• Bio::DB::SeqFeature::Store::berkeleydb3(3pm)
• Bio::DB::SeqFeature::Store::memory(3pm)
• Bio::DB::SeqHound(3pm)
• Bio::DB::SeqI(3pm)
• Bio::DB::SeqVersion(3pm)
• Bio::DB::SeqVersion::gi(3pm)
• Bio::DB::SwissProt(3pm)
• Bio::DB::TFBS(3pm)
• Bio::DB::TFBS::transfac_pro(3pm)
• Bio::DB::Taxonomy(3pm)
• Bio::DB::Taxonomy::entrez(3pm)
• Bio::DB::Taxonomy::flatfile(3pm)
• Bio::DB::Taxonomy::greengenes(3pm)
• Bio::DB::Taxonomy::list(3pm)
• Bio::DB::Taxonomy::silva(3pm)
• Bio::DB::Universal(3pm)
• Bio::DB::UpdateableSeqI(3pm)
• Bio::DB::WebDBSeqI(3pm)
• Bio::DBLinkContainerI(3pm)
• Bio::Das::FeatureTypeI(3pm)
• Bio::Das::SegmentI(3pm)
• Bio::DasI(3pm)
• Bio::DescribableI(3pm)
• Bio::Draw::Pictogram(3pm)
• Bio::Event::EventGeneratorI(3pm)
• Bio::Event::EventHandlerI(3pm)
• Bio::Factory::AnalysisI(3pm)
• Bio::Factory::ApplicationFactoryI(3pm)
• Bio::Factory::DriverFactory(3pm)
• Bio::Factory::FTLocationFactory(3pm)
• Bio::Factory::LocationFactoryI(3pm)
• Bio::Factory::MapFactoryI(3pm)
• Bio::Factory::ObjectBuilderI(3pm)
• Bio::Factory::ObjectFactory(3pm)
• Bio::Factory::ObjectFactoryI(3pm)
• Bio::Factory::SeqAnalysisParserFactory(3pm)
• Bio::Factory::SeqAnalysisParserFactoryI(3pm)
• Bio::Factory::SequenceFactoryI(3pm)
• Bio::Factory::SequenceProcessorI(3pm)
• Bio::Factory::SequenceStreamI(3pm)
• Bio::Factory::TreeFactoryI(3pm)
• Bio::FeatureHolderI(3pm)
• Bio::HandlerBaseI(3pm)
• Bio::IdCollectionI(3pm)
• Bio::IdentifiableI(3pm)
• Bio::Index::Abstract(3pm)
• Bio::Index::AbstractSeq(3pm)
• Bio::Index::Blast(3pm)
• Bio::Index::BlastTable(3pm)
• Bio::Index::EMBL(3pm)
• Bio::Index::Fasta(3pm)
• Bio::Index::Fastq(3pm)
• Bio::Index::GenBank(3pm)
• Bio::Index::Hmmer(3pm)
• Bio::Index::Qual(3pm)
• Bio::Index::Stockholm(3pm)
• Bio::Index::SwissPfam(3pm)
• Bio::Index::Swissprot(3pm)
• Bio::LiveSeq::AARange(3pm)
• Bio::LiveSeq::Chain(3pm)
• Bio::LiveSeq::ChainI(3pm)
• Bio::LiveSeq::DNA(3pm)
• Bio::LiveSeq::Exon(3pm)
• Bio::LiveSeq::Gene(3pm)
• Bio::LiveSeq::IO::BioPerl(3pm)
• Bio::LiveSeq::IO::Loader(3pm)
• Bio::LiveSeq::Intron(3pm)
• Bio::LiveSeq::Mutation(3pm)
• Bio::LiveSeq::Mutator(3pm)
• Bio::LiveSeq::Prim_Transcript(3pm)
• Bio::LiveSeq::Range(3pm)
• Bio::LiveSeq::Repeat_Region(3pm)
• Bio::LiveSeq::Repeat_Unit(3pm)
• Bio::LiveSeq::SeqI(3pm)
• Bio::LiveSeq::Transcript(3pm)
• Bio::LiveSeq::Translation(3pm)
• Bio::LocatableSeq(3pm)
• Bio::Location::Atomic(3pm)
• Bio::Location::AvWithinCoordPolicy(3pm)
• Bio::Location::CoordinatePolicyI(3pm)
• Bio::Location::Fuzzy(3pm)
• Bio::Location::FuzzyLocationI(3pm)
• Bio::Location::NarrowestCoordPolicy(3pm)
• Bio::Location::Simple(3pm)
• Bio::Location::Split(3pm)
• Bio::Location::SplitLocationI(3pm)
• Bio::Location::WidestCoordPolicy(3pm)
• Bio::LocationI(3pm)
• Bio::Map::Clone(3pm)
• Bio::Map::Contig(3pm)
• Bio::Map::CytoMap(3pm)
• Bio::Map::CytoMarker(3pm)
• Bio::Map::CytoPosition(3pm)
• Bio::Map::EntityI(3pm)
• Bio::Map::FPCMarker(3pm)
• Bio::Map::Gene(3pm)
• Bio::Map::GeneMap(3pm)
• Bio::Map::GenePosition(3pm)
• Bio::Map::GeneRelative(3pm)
• Bio::Map::LinkageMap(3pm)
• Bio::Map::LinkagePosition(3pm)
• Bio::Map::MapI(3pm)
• Bio::Map::Mappable(3pm)
• Bio::Map::MappableI(3pm)
• Bio::Map::Marker(3pm)
• Bio::Map::MarkerI(3pm)
• Bio::Map::Microsatellite(3pm)
• Bio::Map::OrderedPosition(3pm)
• Bio::Map::OrderedPositionWithDistance(3pm)
• Bio::Map::Physical(3pm)
• Bio::Map::Position(3pm)
• Bio::Map::PositionHandler(3pm)
• Bio::Map::PositionHandlerI(3pm)
• Bio::Map::PositionI(3pm)
• Bio::Map::PositionWithSequence(3pm)
• Bio::Map::Prediction(3pm)
• Bio::Map::Relative(3pm)
• Bio::Map::RelativeI(3pm)
• Bio::Map::SimpleMap(3pm)
• Bio::Map::TranscriptionFactor(3pm)
• Bio::MapIO(3pm)
• Bio::MapIO::fpc(3pm)
• Bio::MapIO::mapmaker(3pm)
• Bio::Matrix::Generic(3pm)
• Bio::Matrix::IO(3pm)
• Bio::Matrix::IO::mlagan(3pm)
• Bio::Matrix::IO::phylip(3pm)
• Bio::Matrix::IO::scoring(3pm)
• Bio::Matrix::MatrixI(3pm)
• Bio::Matrix::Mlagan(3pm)
• Bio::Matrix::PSM::IO(3pm)
• Bio::Matrix::PSM::IO::mast(3pm)
• Bio::Matrix::PSM::IO::masta(3pm)
• Bio::Matrix::PSM::IO::meme(3pm)
• Bio::Matrix::PSM::IO::psiblast(3pm)
• Bio::Matrix::PSM::IO::transfac(3pm)
• Bio::Matrix::PSM::InstanceSite(3pm)
• Bio::Matrix::PSM::InstanceSiteI(3pm)
• Bio::Matrix::PSM::ProtMatrix(3pm)
• Bio::Matrix::PSM::ProtPsm(3pm)
• Bio::Matrix::PSM::Psm(3pm)
• Bio::Matrix::PSM::PsmHeader(3pm)
• Bio::Matrix::PSM::PsmHeaderI(3pm)
• Bio::Matrix::PSM::PsmI(3pm)
• Bio::Matrix::PSM::SiteMatrix(3pm)
• Bio::Matrix::PSM::SiteMatrixI(3pm)
• Bio::Matrix::PhylipDist(3pm)
• Bio::Matrix::Scoring(3pm)
• Bio::MolEvol::CodonModel(3pm)
• Bio::Nexml::Factory(3pm)
• Bio::NexmlIO(3pm)
• Bio::Ontology::DocumentRegistry(3pm)
• Bio::Ontology::GOterm(3pm)
• Bio::Ontology::InterProTerm(3pm)
• Bio::Ontology::OBOEngine(3pm)
• Bio::Ontology::OBOterm(3pm)
• Bio::Ontology::Ontology(3pm)
• Bio::Ontology::OntologyEngineI(3pm)
• Bio::Ontology::OntologyI(3pm)
• Bio::Ontology::OntologyStore(3pm)
• Bio::Ontology::Path(3pm)
• Bio::Ontology::PathI(3pm)
• Bio::Ontology::Relationship(3pm)
• Bio::Ontology::RelationshipFactory(3pm)
• Bio::Ontology::RelationshipI(3pm)
• Bio::Ontology::RelationshipType(3pm)
• Bio::Ontology::SimpleGOEngine::GraphAdaptor(3pm)
• Bio::Ontology::SimpleOntologyEngine(3pm)
• Bio::Ontology::Term(3pm)
• Bio::Ontology::TermFactory(3pm)
• Bio::Ontology::TermI(3pm)
• Bio::OntologyIO(3pm)
• Bio::OntologyIO::Handlers::BaseSAXHandler(3pm)
• Bio::OntologyIO::Handlers::InterProHandler(3pm)
• Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler(3pm)
• Bio::OntologyIO::InterProParser(3pm)
• Bio::OntologyIO::dagflat(3pm)
• Bio::OntologyIO::goflat(3pm)
• Bio::OntologyIO::obo(3pm)
• Bio::OntologyIO::simplehierarchy(3pm)
• Bio::OntologyIO::soflat(3pm)
• Bio::ParameterBaseI(3pm)
• Bio::Perl(3pm)
• Bio::Phenotype::Correlate(3pm)
• Bio::Phenotype::MeSH::Term(3pm)
• Bio::Phenotype::MeSH::Twig(3pm)
• Bio::Phenotype::Measure(3pm)
• Bio::Phenotype::OMIM::MiniMIMentry(3pm)
• Bio::Phenotype::OMIM::OMIMentry(3pm)
• Bio::Phenotype::OMIM::OMIMentryAllelicVariant(3pm)
• Bio::Phenotype::OMIM::OMIMparser(3pm)
• Bio::Phenotype::Phenotype(3pm)
• Bio::Phenotype::PhenotypeI(3pm)
• Bio::PhyloNetwork(3pm)
• Bio::PhyloNetwork::Factory(3pm)
• Bio::PhyloNetwork::FactoryX(3pm)
• Bio::PhyloNetwork::GraphViz(3pm)
• Bio::PhyloNetwork::RandomFactory(3pm)
• Bio::PhyloNetwork::TreeFactory(3pm)
• Bio::PhyloNetwork::TreeFactoryMulti(3pm)
• Bio::PhyloNetwork::TreeFactoryX(3pm)
• Bio::PhyloNetwork::muVector(3pm)
• Bio::PopGen::Genotype(3pm)
• Bio::PopGen::GenotypeI(3pm)
• Bio::PopGen::HtSNP(3pm)
• Bio::PopGen::IO(3pm)
• Bio::PopGen::IO::csv(3pm)
• Bio::PopGen::IO::hapmap(3pm)
• Bio::PopGen::IO::phase(3pm)
• Bio::PopGen::IO::prettybase(3pm)
• Bio::PopGen::Individual(3pm)
• Bio::PopGen::IndividualI(3pm)
• Bio::PopGen::Marker(3pm)
• Bio::PopGen::MarkerI(3pm)
• Bio::PopGen::PopStats(3pm)
• Bio::PopGen::Population(3pm)
• Bio::PopGen::PopulationI(3pm)
• Bio::PopGen::Simulation::Coalescent(3pm)
• Bio::PopGen::Simulation::GeneticDrift(3pm)
• Bio::PopGen::Statistics(3pm)
• Bio::PopGen::TagHaplotype(3pm)
• Bio::PopGen::Utilities(3pm)
• Bio::PrimarySeq(3pm)
• Bio::PrimarySeqI(3pm)
• Bio::PullParserI(3pm)
• Bio::Range(3pm)
• Bio::RangeI(3pm)
• Bio::Restriction::Analysis(3pm)
• Bio::Restriction::Enzyme(3pm)
• Bio::Restriction::Enzyme::MultiCut(3pm)
• Bio::Restriction::Enzyme::MultiSite(3pm)
• Bio::Restriction::EnzymeCollection(3pm)
• Bio::Restriction::EnzymeI(3pm)
• Bio::Restriction::IO(3pm)
• Bio::Restriction::IO::bairoch(3pm)
• Bio::Restriction::IO::base(3pm)
• Bio::Restriction::IO::itype2(3pm)
• Bio::Restriction::IO::prototype(3pm)
• Bio::Restriction::IO::withrefm(3pm)
• Bio::Root::Build(3pm)
• Bio::Root::Exception(3pm)
• Bio::Root::HTTPget(3pm)
• Bio::Root::IO(3pm)
• Bio::Root::Root(3pm)
• Bio::Root::RootI(3pm)
• Bio::Root::Storable(3pm)
• Bio::Root::Test(3pm)
• Bio::Root::Utilities(3pm)
• Bio::Root::Version(3pm)
• Bio::Search::BlastStatistics(3pm)
• Bio::Search::BlastUtils(3pm)
• Bio::Search::DatabaseI(3pm)
• Bio::Search::GenericDatabase(3pm)
• Bio::Search::GenericStatistics(3pm)
• Bio::Search::HSP::BlastHSP(3pm)
• Bio::Search::HSP::BlastPullHSP(3pm)
• Bio::Search::HSP::FastaHSP(3pm)
• Bio::Search::HSP::GenericHSP(3pm)
• Bio::Search::HSP::HMMERHSP(3pm)
• Bio::Search::HSP::HSPFactory(3pm)
• Bio::Search::HSP::HSPI(3pm)
• Bio::Search::HSP::HmmpfamHSP(3pm)
• Bio::Search::HSP::ModelHSP(3pm)
• Bio::Search::HSP::PSLHSP(3pm)
• Bio::Search::HSP::PsiBlastHSP(3pm)
• Bio::Search::HSP::PullHSPI(3pm)
• Bio::Search::HSP::WABAHSP(3pm)
• Bio::Search::Hit::BlastHit(3pm)
• Bio::Search::Hit::BlastPullHit(3pm)
• Bio::Search::Hit::Fasta(3pm)
• Bio::Search::Hit::GenericHit(3pm)
• Bio::Search::Hit::HMMERHit(3pm)
• Bio::Search::Hit::HitFactory(3pm)
• Bio::Search::Hit::HitI(3pm)
• Bio::Search::Hit::HmmpfamHit(3pm)
• Bio::Search::Hit::ModelHit(3pm)
• Bio::Search::Hit::PsiBlastHit(3pm)
• Bio::Search::Hit::PullHitI(3pm)
• Bio::Search::Hit::hmmer3Hit(3pm)
• Bio::Search::Iteration::GenericIteration(3pm)
• Bio::Search::Iteration::IterationI(3pm)
• Bio::Search::Processor(3pm)
• Bio::Search::Result::BlastPullResult(3pm)
• Bio::Search::Result::BlastResult(3pm)
• Bio::Search::Result::CrossMatchResult(3pm)
• Bio::Search::Result::GenericResult(3pm)
• Bio::Search::Result::HMMERResult(3pm)
• Bio::Search::Result::HmmpfamResult(3pm)
• Bio::Search::Result::PullResultI(3pm)
• Bio::Search::Result::ResultFactory(3pm)
• Bio::Search::Result::ResultI(3pm)
• Bio::Search::Result::WABAResult(3pm)
• Bio::Search::Result::hmmer3Result(3pm)
• Bio::Search::SearchUtils(3pm)
• Bio::Search::StatisticsI(3pm)
• Bio::Search::Tiling::MapTileUtils(3pm)
• Bio::Search::Tiling::MapTiling(3pm)
• Bio::Search::Tiling::TilingI(3pm)
• Bio::SearchDist(3pm)
• Bio::SearchIO(3pm)
• Bio::SearchIO::EventHandlerI(3pm)
• Bio::SearchIO::FastHitEventBuilder(3pm)
• Bio::SearchIO::IteratedSearchResultEventBuilder(3pm)
• Bio::SearchIO::SearchResultEventBuilder(3pm)
• Bio::SearchIO::SearchWriterI(3pm)
• Bio::SearchIO::Writer::BSMLResultWriter(3pm)
• Bio::SearchIO::Writer::GbrowseGFF(3pm)
• Bio::SearchIO::Writer::HSPTableWriter(3pm)
• Bio::SearchIO::Writer::HTMLResultWriter(3pm)
• Bio::SearchIO::Writer::HitTableWriter(3pm)
• Bio::SearchIO::Writer::ResultTableWriter(3pm)
• Bio::SearchIO::Writer::TextResultWriter(3pm)
• Bio::SearchIO::XML::BlastHandler(3pm)
• Bio::SearchIO::XML::PsiBlastHandler(3pm)
• Bio::SearchIO::axt(3pm)
• Bio::SearchIO::blast(3pm)
• Bio::SearchIO::blast_pull(3pm)
• Bio::SearchIO::blasttable(3pm)
• Bio::SearchIO::blastxml(3pm)
• Bio::SearchIO::cross_match(3pm)
• Bio::SearchIO::erpin(3pm)
• Bio::SearchIO::exonerate(3pm)
• Bio::SearchIO::fasta(3pm)
• Bio::SearchIO::gmap_f9(3pm)
• Bio::SearchIO::hmmer(3pm)
• Bio::SearchIO::hmmer2(3pm)
• Bio::SearchIO::hmmer3(3pm)
• Bio::SearchIO::hmmer_pull(3pm)
• Bio::SearchIO::infernal(3pm)
• Bio::SearchIO::megablast(3pm)
• Bio::SearchIO::psl(3pm)
• Bio::SearchIO::rnamotif(3pm)
• Bio::SearchIO::sim4(3pm)
• Bio::SearchIO::waba(3pm)
• Bio::SearchIO::wise(3pm)
• Bio::Seq(3pm)
• Bio::Seq::BaseSeqProcessor(3pm)
• Bio::Seq::EncodedSeq(3pm)
• Bio::Seq::LargeLocatableSeq(3pm)
• Bio::Seq::LargePrimarySeq(3pm)
• Bio::Seq::LargeSeq(3pm)
• Bio::Seq::LargeSeqI(3pm)
• Bio::Seq::Meta(3pm)
• Bio::Seq::Meta::Array(3pm)
• Bio::Seq::MetaI(3pm)
• Bio::Seq::PrimaryQual(3pm)
• Bio::Seq::PrimedSeq(3pm)
• Bio::Seq::QualI(3pm)
• Bio::Seq::Quality(3pm)
• Bio::Seq::RichSeq(3pm)
• Bio::Seq::RichSeqI(3pm)
• Bio::Seq::SeqBuilder(3pm)
• Bio::Seq::SeqFactory(3pm)
• Bio::Seq::SeqFastaSpeedFactory(3pm)
• Bio::Seq::SeqWithQuality(3pm)
• Bio::Seq::SequenceTrace(3pm)
• Bio::Seq::SimulatedRead(3pm)
• Bio::Seq::TraceI(3pm)
• Bio::SeqAnalysisParserI(3pm)
• Bio::SeqEvolution::DNAPoint(3pm)
• Bio::SeqEvolution::EvolutionI(3pm)
• Bio::SeqEvolution::Factory(3pm)
• Bio::SeqFeature::Amplicon(3pm)
• Bio::SeqFeature::AnnotationAdaptor(3pm)
• Bio::SeqFeature::Collection(3pm)
• Bio::SeqFeature::CollectionI(3pm)
• Bio::SeqFeature::Computation(3pm)
• Bio::SeqFeature::FeaturePair(3pm)
• Bio::SeqFeature::Gene::Exon(3pm)
• Bio::SeqFeature::Gene::ExonI(3pm)
• Bio::SeqFeature::Gene::GeneStructure(3pm)
• Bio::SeqFeature::Gene::GeneStructureI(3pm)
• Bio::SeqFeature::Gene::Intron(3pm)
• Bio::SeqFeature::Gene::NC_Feature(3pm)
• Bio::SeqFeature::Gene::Poly_A_site(3pm)
• Bio::SeqFeature::Gene::Promoter(3pm)
• Bio::SeqFeature::Gene::Transcript(3pm)
• Bio::SeqFeature::Gene::TranscriptI(3pm)
• Bio::SeqFeature::Gene::UTR(3pm)
• Bio::SeqFeature::Generic(3pm)
• Bio::SeqFeature::Lite(3pm)
• Bio::SeqFeature::PositionProxy(3pm)
• Bio::SeqFeature::Primer(3pm)
• Bio::SeqFeature::SiRNA::Oligo(3pm)
• Bio::SeqFeature::SiRNA::Pair(3pm)
• Bio::SeqFeature::Similarity(3pm)
• Bio::SeqFeature::SimilarityPair(3pm)
• Bio::SeqFeature::SubSeq(3pm)
• Bio::SeqFeature::Tools::FeatureNamer(3pm)
• Bio::SeqFeature::Tools::IDHandler(3pm)
• Bio::SeqFeature::Tools::TypeMapper(3pm)
• Bio::SeqFeature::Tools::Unflattener(3pm)
• Bio::SeqFeature::TypedSeqFeatureI(3pm)
• Bio::SeqFeatureI(3pm)
• Bio::SeqI(3pm)
• Bio::SeqIO(3pm)
• Bio::SeqIO::FTHelper(3pm)
• Bio::SeqIO::Handler::GenericRichSeqHandler(3pm)
• Bio::SeqIO::MultiFile(3pm)
• Bio::SeqIO::abi(3pm)
• Bio::SeqIO::ace(3pm)
• Bio::SeqIO::agave(3pm)
• Bio::SeqIO::alf(3pm)
• Bio::SeqIO::asciitree(3pm)
• Bio::SeqIO::bsml(3pm)
• Bio::SeqIO::bsml_sax(3pm)
• Bio::SeqIO::chadoxml(3pm)
• Bio::SeqIO::chaos(3pm)
• Bio::SeqIO::chaosxml(3pm)
• Bio::SeqIO::ctf(3pm)
• Bio::SeqIO::embl(3pm)
• Bio::SeqIO::embldriver(3pm)
• Bio::SeqIO::entrezgene(3pm)
• Bio::SeqIO::excel(3pm)
• Bio::SeqIO::exp(3pm)
• Bio::SeqIO::fasta(3pm)
• Bio::SeqIO::fastq(3pm)
• Bio::SeqIO::flybase_chadoxml(3pm)
• Bio::SeqIO::game(3pm)
• Bio::SeqIO::game::featHandler(3pm)
• Bio::SeqIO::game::gameHandler(3pm)
• Bio::SeqIO::game::gameSubs(3pm)
• Bio::SeqIO::game::gameWriter(3pm)
• Bio::SeqIO::game::seqHandler(3pm)
• Bio::SeqIO::gbdriver(3pm)
• Bio::SeqIO::gbxml(3pm)
• Bio::SeqIO::gcg(3pm)
• Bio::SeqIO::genbank(3pm)
• Bio::SeqIO::interpro(3pm)
• Bio::SeqIO::kegg(3pm)
• Bio::SeqIO::largefasta(3pm)
• Bio::SeqIO::lasergene(3pm)
• Bio::SeqIO::locuslink(3pm)
• Bio::SeqIO::mbsout(3pm)
• Bio::SeqIO::metafasta(3pm)
• Bio::SeqIO::msout(3pm)
• Bio::SeqIO::nexml(3pm)
• Bio::SeqIO::phd(3pm)
• Bio::SeqIO::pir(3pm)
• Bio::SeqIO::pln(3pm)
• Bio::SeqIO::qual(3pm)
• Bio::SeqIO::raw(3pm)
• Bio::SeqIO::scf(3pm)
• Bio::SeqIO::seqxml(3pm)
• Bio::SeqIO::strider(3pm)
• Bio::SeqIO::swiss(3pm)
• Bio::SeqIO::swissdriver(3pm)
• Bio::SeqIO::tab(3pm)
• Bio::SeqIO::table(3pm)
• Bio::SeqIO::tigr(3pm)
• Bio::SeqIO::tigrxml(3pm)
• Bio::SeqIO::tinyseq(3pm)
• Bio::SeqIO::tinyseq::tinyseqHandler(3pm)
• Bio::SeqIO::ztr(3pm)
• Bio::SeqUtils(3pm)
• Bio::SimpleAlign(3pm)
• Bio::SimpleAnalysisI(3pm)
• Bio::Species(3pm)
• Bio::Structure::Atom(3pm)
• Bio::Structure::Chain(3pm)
• Bio::Structure::Entry(3pm)
• Bio::Structure::IO(3pm)
• Bio::Structure::IO::pdb(3pm)
• Bio::Structure::Model(3pm)
• Bio::Structure::Residue(3pm)
• Bio::Structure::SecStr::DSSP::Res(3pm)
• Bio::Structure::SecStr::STRIDE::Res(3pm)
• Bio::Structure::StructureI(3pm)
• Bio::Symbol::Alphabet(3pm)
• Bio::Symbol::AlphabetI(3pm)
• Bio::Symbol::DNAAlphabet(3pm)
• Bio::Symbol::ProteinAlphabet(3pm)
• Bio::Symbol::Symbol(3pm)
• Bio::Symbol::SymbolI(3pm)
• Bio::Taxon(3pm)
• Bio::Taxonomy(3pm)
• Bio::Taxonomy::FactoryI(3pm)
• Bio::Taxonomy::Node(3pm)
• Bio::Taxonomy::Taxon(3pm)
• Bio::Taxonomy::Tree(3pm)
• Bio::Tools::AlignFactory(3pm)
• Bio::Tools::Alignment::Consed(3pm)
• Bio::Tools::Alignment::Trim(3pm)
• Bio::Tools::AmpliconSearch(3pm)
• Bio::Tools::Analysis::DNA::ESEfinder(3pm)
• Bio::Tools::Analysis::Protein::Domcut(3pm)
• Bio::Tools::Analysis::Protein::ELM(3pm)
• Bio::Tools::Analysis::Protein::GOR4(3pm)
• Bio::Tools::Analysis::Protein::HNN(3pm)
• Bio::Tools::Analysis::Protein::Mitoprot(3pm)
• Bio::Tools::Analysis::Protein::NetPhos(3pm)
• Bio::Tools::Analysis::Protein::Scansite(3pm)
• Bio::Tools::Analysis::Protein::Sopma(3pm)
• Bio::Tools::Analysis::SimpleAnalysisBase(3pm)
• Bio::Tools::AnalysisResult(3pm)
• Bio::Tools::Blat(3pm)
• Bio::Tools::CodonTable(3pm)
• Bio::Tools::Coil(3pm)
• Bio::Tools::ECnumber(3pm)
• Bio::Tools::EMBOSS::Palindrome(3pm)
• Bio::Tools::EPCR(3pm)
• Bio::Tools::ERPIN(3pm)
• Bio::Tools::ESTScan(3pm)
• Bio::Tools::Eponine(3pm)
• Bio::Tools::Est2Genome(3pm)
• Bio::Tools::Fgenesh(3pm)
• Bio::Tools::FootPrinter(3pm)
• Bio::Tools::GFF(3pm)
• Bio::Tools::Gel(3pm)
• Bio::Tools::Geneid(3pm)
• Bio::Tools::Genemark(3pm)
• Bio::Tools::Genewise(3pm)
• Bio::Tools::Genomewise(3pm)
• Bio::Tools::Genscan(3pm)
• Bio::Tools::Glimmer(3pm)
• Bio::Tools::Grail(3pm)
• Bio::Tools::GuessSeqFormat(3pm)
• Bio::Tools::HMMER::Domain(3pm)
• Bio::Tools::HMMER::Results(3pm)
• Bio::Tools::HMMER::Set(3pm)
• Bio::Tools::Hmmpfam(3pm)
• Bio::Tools::IUPAC(3pm)
• Bio::Tools::Infernal(3pm)
• Bio::Tools::Lucy(3pm)
• Bio::Tools::MZEF(3pm)
• Bio::Tools::Match(3pm)
• Bio::Tools::OddCodes(3pm)
• Bio::Tools::Phylo::Gerp(3pm)
• Bio::Tools::Phylo::Gumby(3pm)
• Bio::Tools::Phylo::Molphy(3pm)
• Bio::Tools::Phylo::Molphy::Result(3pm)
• Bio::Tools::Phylo::PAML(3pm)
• Bio::Tools::Phylo::PAML::Codeml(3pm)
• Bio::Tools::Phylo::PAML::ModelResult(3pm)
• Bio::Tools::Phylo::PAML::Result(3pm)
• Bio::Tools::Phylo::Phylip::ProtDist(3pm)
• Bio::Tools::Prediction::Exon(3pm)
• Bio::Tools::Prediction::Gene(3pm)
• Bio::Tools::Primer3(3pm)
• Bio::Tools::Primer::Assessor::Base(3pm)
• Bio::Tools::Primer::AssessorI(3pm)
• Bio::Tools::Primer::Feature(3pm)
• Bio::Tools::Primer::Pair(3pm)
• Bio::Tools::Prints(3pm)
• Bio::Tools::Profile(3pm)
• Bio::Tools::Promoterwise(3pm)
• Bio::Tools::PrositeScan(3pm)
• Bio::Tools::Protparam(3pm)
• Bio::Tools::Pseudowise(3pm)
• Bio::Tools::QRNA(3pm)
• Bio::Tools::RNAMotif(3pm)
• Bio::Tools::RandomDistFunctions(3pm)
• Bio::Tools::RepeatMasker(3pm)
• Bio::Tools::Run::GenericParameters(3pm)
• Bio::Tools::Run::ParametersI(3pm)
• Bio::Tools::Run::RemoteBlast(3pm)
• Bio::Tools::Run::StandAloneBlast(3pm)
• Bio::Tools::Run::StandAloneNCBIBlast(3pm)
• Bio::Tools::Run::StandAloneWUBlast(3pm)
• Bio::Tools::Run::WrapperBase(3pm)
• Bio::Tools::Run::WrapperBase::CommandExts(3pm)
• Bio::Tools::Seg(3pm)
• Bio::Tools::SeqPattern(3pm)
• Bio::Tools::SeqPattern::Backtranslate(3pm)
• Bio::Tools::SeqStats(3pm)
• Bio::Tools::SeqWords(3pm)
• Bio::Tools::SiRNA(3pm)
• Bio::Tools::SiRNA::Ruleset::saigo(3pm)
• Bio::Tools::SiRNA::Ruleset::tuschl(3pm)
• Bio::Tools::Sigcleave(3pm)
• Bio::Tools::Signalp(3pm)
• Bio::Tools::Signalp::ExtendedSignalp(3pm)
• Bio::Tools::Sim4::Exon(3pm)
• Bio::Tools::Sim4::Results(3pm)
• Bio::Tools::Spidey::Exon(3pm)
• Bio::Tools::Spidey::Results(3pm)
• Bio::Tools::TandemRepeatsFinder(3pm)
• Bio::Tools::TargetP(3pm)
• Bio::Tools::Tmhmm(3pm)
• Bio::Tools::dpAlign(3pm)
• Bio::Tools::ipcress(3pm)
• Bio::Tools::isPcr(3pm)
• Bio::Tools::pICalculator(3pm)
• Bio::Tools::pSW(3pm)
• Bio::Tools::tRNAscanSE(3pm)
• Bio::Tree::AlleleNode(3pm)
• Bio::Tree::AnnotatableNode(3pm)
• Bio::Tree::Compatible(3pm)
• Bio::Tree::DistanceFactory(3pm)
• Bio::Tree::Draw::Cladogram(3pm)
• Bio::Tree::Node(3pm)
• Bio::Tree::NodeI(3pm)
• Bio::Tree::NodeNHX(3pm)
• Bio::Tree::RandomFactory(3pm)
• Bio::Tree::Statistics(3pm)
• Bio::Tree::Tree(3pm)
• Bio::Tree::TreeFunctionsI(3pm)
• Bio::Tree::TreeI(3pm)
• Bio::TreeIO(3pm)
• Bio::TreeIO::NewickParser(3pm)
• Bio::TreeIO::TreeEventBuilder(3pm)
• Bio::TreeIO::cluster(3pm)
• Bio::TreeIO::lintree(3pm)
• Bio::TreeIO::newick(3pm)
• Bio::TreeIO::nexml(3pm)
• Bio::TreeIO::nexus(3pm)
• Bio::TreeIO::nhx(3pm)
• Bio::TreeIO::pag(3pm)
• Bio::TreeIO::phyloxml(3pm)
• Bio::TreeIO::svggraph(3pm)
• Bio::TreeIO::tabtree(3pm)
• Bio::UpdateableSeqI(3pm)
• Bio::Variation::AAChange(3pm)
• Bio::Variation::AAReverseMutate(3pm)
• Bio::Variation::Allele(3pm)
• Bio::Variation::DNAMutation(3pm)
• Bio::Variation::IO(3pm)
• Bio::Variation::IO::flat(3pm)
• Bio::Variation::IO::xml(3pm)
• Bio::Variation::RNAChange(3pm)
• Bio::Variation::SNP(3pm)
• Bio::Variation::SeqDiff(3pm)
• Bio::Variation::VariantI(3pm)
• Bio::WebAgent(3pm)
• bp_aacomp(1p)
• bp_biofetch_genbank_proxy(1p)
• bp_bioflat_index(1p)
• bp_biogetseq(1p)
• bp_blast2tree(1p)
• bp_bulk_load_gff(1p)
• bp_chaos_plot(1p)
• bp_classify_hits_kingdom(1p)
• bp_composite_LD(1p)
• bp_dbsplit(1p)
• bp_download_query_genbank(1p)
• bp_extract_feature_seq(1p)
• bp_fast_load_gff(1p)
• bp_fastam9_to_table(1p)
• bp_fetch(1p)
• bp_filter_search(1p)
• bp_flanks(1p)
• bp_gccalc(1p)
• bp_genbank2gff(1p)
• bp_genbank2gff3(1p)
• bp_generate_histogram(1p)
• bp_heterogeneity_test(1p)
• bp_hivq(1p)
• bp_hmmer_to_table(1p)
• bp_index(1p)
• bp_load_gff(1p)
• bp_local_taxonomydb_query(1p)
• bp_make_mrna_protein(1p)
• bp_mask_by_search(1p)
• bp_meta_gff(1p)
• bp_mrtrans(1p)
• bp_mutate(1p)
• bp_netinstall(1p)
• bp_nexus2nh(1p)
• bp_nrdb(1p)
• bp_oligo_count(1p)
• bp_pairwise_kaks(1p)
• bp_parse_hmmsearch(1p)
• bp_process_gadfly(1p)
• bp_process_sgd(1p)
• bp_process_wormbase(1p)
• bp_query_entrez_taxa(1p)
• bp_remote_blast(1p)
• bp_revtrans-motif(1p)
• bp_search2BSML(1p)
• bp_search2alnblocks(1p)
• bp_search2gff(1p)
• bp_search2table(1p)
• bp_search2tribe(1p)
• bp_seq_length(1p)
• bp_seqconvert(1p)
• bp_seqcut(1p)
• bp_seqfeature_load(1p)
• bp_seqpart(1p)
• bp_seqret(1p)
• bp_seqretsplit(1p)
• bp_split_seq(1p)
• bp_sreformat(1p)
• bp_taxid4species(1p)
• bp_taxonomy2tree(1p)
• bp_translate_seq(1p)
• bp_tree2pag(1p)
• bp_unflatten_seq(1p)