.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.43.3.
.TH ZOE-LOOP "1" "October 2013" "zoe-loop 2010-07-28" "User Commands"
.SH NAME
zoe-loop \- SNAP module zoe-loop
.SH SYNOPSIS
.B zoe\-loop
<\fBtest\fR> [\fIiterations \- default 1000\fR]
.SH OPTIONS
.HP
\fB\-all\fR
.HP
\fB\-Vec\fR, \fB\-IVec\fR, \fB\-FVec\fR, \fB\-TVec\fR, \fB\-Hash\fR \fB\-Xtree\fR
.HP
\fB\-Feature\fR, \fB\-FeatureVec\fR
.HP
\fB\-FastaFile\fR, \fB\-DNA\fR, \fB\-Protein\fR, \fB\-Alignment\fR \fB\-CDS\fR \fB\-Palign\fR
.HP
\fB\-Distribution\fR, \fB\-Duration\fR, \fB\-State\fR, \fB\-Transition\fR
.PP
The following tests are not part of \fB\-all\fR and require files
.HP
\fB\-FeatureTable\fR <file>
.HP
\fB\-Model\fR, \fB\-Scanner\fR, \fB\-Counter\fR
.HP
\fB\-HMM\fR <file>