.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.44.1.
.TH PARREC2NII "1" "March 2014" "parrec2nii 1.3.0" "User Commands"
.SH NAME
parrec2nii \- convert PARREC image to NIfTI
.SH SYNOPSIS
.B parrec2nii
[\fIOPTIONS\fR] \fI<PAR files>\fR
.SH DESCRIPTION
PAR/REC to NIfTI converter
.SH OPTIONS
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-v\fR, \fB\-\-verbose\fR
Make some noise.
.TP
\fB\-o\fR OUTDIR, \fB\-\-output\-dir\fR=\fIOUTDIR\fR
Destination directory for NIfTI files. Default:
current directory.
.TP
\fB\-c\fR, \fB\-\-compressed\fR
Whether to write compressed NIfTI files or not.
.TP
\fB\-\-origin\fR=\fIORIGIN\fR
Reference point of the q\-form transformation of the
NIfTI image. If 'scanner' the (0,0,0) coordinates will
refer to the scanner's iso center. If 'fov', this
coordinate will be the center of the recorded volume
(field of view). Default: 'scanner'.
.TP
\fB\-\-minmax\fR=\fIMINMAX\fR
Mininum and maximum settings to be stored in the NIfTI
header. If any of them is set to 'parse', the scaled
data is scanned for the actual minimum and maximum. To
bypass this potentially slow and memory intensive step
(the data has to be scaled and fully loaded into
memory), fixed values can be provided as spaceseparated pair, e.g. '5.4 120.4'. It is possible to
set a fixed minimum as scan for the actual maximum
(and vice versa). Default: 'parse parse'.
.TP
\fB\-\-store\-header\fR
If set, all information from the PAR header is stored
in an extension of the NIfTI file header. Default: off
.TP
\fB\-\-scaling\fR=\fISCALING\fR
Choose data scaling setting. The PAR header defines
two different data scaling settings: 'dv' (values
displayed on console) and 'fp' (floating point
values). Either one can be chosen, or scaling can be
disabled completely ('off').  Note that neither method
will actually scale the data, but just store the
corresponding settings in the NIfTI header. Default:
\&'dv'