.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.40.13.
.TH RANDSAMPLE "1" "December 2012" "randsample 2.0.9.1" "User Commands"
.SH NAME
randsample \- Random sample certain number/percentage of tags
.SH SYNOPSIS
.B randsample
\fI<-t file> \fR[\fI-p percent|-n number\fR] [\fI-o outputfile\fR] [\fIoptions\fR]
.SH DESCRIPTION
randsample \fB\-\-\fR Random sample certain number/percentage of tags. Method: 1.
Calculate the percentage of tags needed to be kept; 2. For each chromosome,
random sample certain percentage of tags.
.SH OPTIONS
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit.
.TP
\fB\-t\fR TFILE
Sequencing alignment file. REQUIRED.
.TP
\fB\-p\fR PERCENTAGE, \fB\-\-percentage\fR=\fIPERCENTAGE\fR
Percentage of tags you want to keep. Input 80.0 for
80%. This option can't be used at the same time with
\fB\-n\fR/\-\-num. REQUIRED
.TP
\fB\-n\fR NUMBER, \fB\-\-number\fR=\fINUMBER\fR
Number of tags you want to keep. Input 8000000 or 8e+6
for 8 million. This option can't be used at the same
time with \fB\-p\fR/\-\-percent. Note that the number of tags
in output is approximate as the number specified here.
REQUIRED
.TP
\fB\-o\fR OUTPUTFILE
Output BED file name. If not specified, will write to
standard output. DEFAULT: stdout
.TP
\fB\-s\fR TSIZE, \fB\-\-tsize\fR=\fITSIZE\fR
Tag size. This will overide the auto detected tag
size. DEFAULT: Not set
.TP
\fB\-f\fR FORMAT, \fB\-\-format\fR=\fIFORMAT\fR
Format of tag file, "AUTO", "BED" or "ELAND" or
"ELANDMULTI" or "ELANDEXPORT" or "SAM" or "BAM" or
"BOWTIE". The default AUTO option will let %prog
decide which format the file is. Please check the
definition in 00README file if you choose
ELAND/ELANDMULTI/ELANDEXPORT/SAM/BAM/BOWTIE. DEFAULT:
"AUTO"
.TP
\fB\-\-verbose\fR=\fIVERBOSE\fR
Set verbose level. 0: only show critical message, 1:
show additional warning message, 2: show process
information, 3: show debug messages. If you want to
know where are the duplicate reads, use 3. DEFAULT:2