NAME¶
GO::Parsers::go_ont_parser - syntax parsing of GO .ontology flat files
SYNOPSIS¶
do not use this class directly; use GO::Parser
DESCRIPTION¶
This generates Stag event streams from one of the various GO flat file formats
(ontology, defs, xref, associations). See GO::Parser for details
Examples of these files can be found at
http://www.geneontology.org
A description of the event streams generated follows; Stag or an XML handler can
be used to catch these events
GO ONTOLOGY FILES¶
These files have the .ontology suffix. The stag-schema for the event streams
generated look like this:
(ontology
(source
(source_type "s")
(source_path "s")
(source_mtime "i"))
(term+
(id "s")
(name "s")
(is_root? "i")
(relationship+
(type "s")
(to "s"))
(dbxref*
(dbname "s")
(acc "s"))
(synonym* "s")
(secondaryid* "s")
(is_obsolete? "i")))
AUTHOR¶