NAME¶
GO::Model::Seq - biological sequence
SYNOPSIS¶
print $gene_product->seq->seq;
DESCRIPTION¶
represents a biological sequence; uses the bioperl Bio::PrimarySeq class
any call that you can do on a bioperl sequence object, you can do here, with the
addition of the calls below
to get bioperl, see
http://www.bioperl.org
pseq¶
Usage -
Returns - Bio::PrimarySeq
Args -
md5checksum¶
Usage - my $md5 = $seq->md5checksum() OR $seq->md5checksum($md5)
Returns - 32 char hex string
Args - 32 char hex string [optional]
checksum for seq - easy way to check if it has been changed etc
(requires Digest::MD5 module from CPAN)
to_fasta¶
Usage -
Returns -
Args -
add_xref¶
- Usage : $term->add_xref($xref);
- Args : GO::Term::Xref