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.\" ========================================================================
.\"
.IX Title "SELECTALL_XML 1p"
.TH SELECTALL_XML 1p "2011-10-14" "perl v5.12.4" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
.if n .ad l
.nh
.SH "NAME"
stag-selectall_xml \- Query all elements from database with an XML output
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.Vb 1
\&  stag-selectall_xml [\-d <dbi>] [\-f file of sql] [\-nesting|n <nesting>] SQL
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This script will query a database using either \s-1SQL\s0 provided by the
script user, or using an \s-1SQL\s0 templates; the query results will be
turned into \s-1XML\s0 using the DBIx::DBStag module. The nesting of the
\&\s-1XML\s0 can be controlled by the DBStag \s-1SQL\s0 extension \*(L"\s-1USE\s0 \s-1NESTING\s0...\*(R"
.SS "\s-1EXAMPLES\s0"
.IX Subsection "EXAMPLES"
.Vb 2
\&  stag-selectall_xml \-d "dbi:Pg:dbname=mydb;host=localhost"\e
\&        "SELECT * FROM a NATURAL JOIN b"
.Ve
.SS "\s-1TEMPLATES\s0"
.IX Subsection "TEMPLATES"
A parameterized \s-1SQL\s0 template (canned query) can be used instead of
specifying the full \s-1SQL\s0
.PP
For example:
.PP
.Vb 1
\&  stag-selectall_xml \-d genedb /genedb\-gene gene_symbol=Adh
.Ve
.PP
Or:
.PP
.Vb 1
\&  stag-selectall_xml \-d genedb /genedb\-gene Adh
.Ve
.PP
Or:
.PP
.Vb 1
\&  stag-selectall_xml \-d genedb /genedb\-gene gene_symbol@=Adh,dpp,bam,indy
.Ve
.PP
A template is indicated by the syntactic shorthand of using a slash to
precede the template name; in this case the template is called
\&\fBgenedb-gene\fR. the \-t option can also be used.
.PP
All the remaining arguments are passed in as \s-1SQL\s0 template
parameters. They can be passed in as either name=value pairs, or as a
simple list of arguments which get passed into the template in order
.PP
To use templates, you should have the environment variable
\&\fB\s-1DBSTAG_TEMPLATE_DIRS\s0\fR set. See \fBDBIx::DBStag\fR for details.
.SS "\s-1LISTING\s0 \s-1AVAILABLE\s0 \s-1TEMPLATES\s0 \s-1FOR\s0 A \s-1DB\s0"
.IX Subsection "LISTING AVAILABLE TEMPLATES FOR A DB"
.Vb 1
\&   stag-selectall_xml \-d mydb \-h
.Ve
.SS "\s-1LISTING\s0 \s-1VARIABLES\s0 \s-1FOR\s0 A \s-1TEMPLATE\s0"
.IX Subsection "LISTING VARIABLES FOR A TEMPLATE"
.Vb 1
\&   stag-selectall_xml /genedb\-gene \-h
.Ve
.SH "ENVIRONMENT VARIABLES"
.IX Header "ENVIRONMENT VARIABLES"
.IP "\s-1DBSTAG_DBIMAP_FILE\s0" 4
.IX Item "DBSTAG_DBIMAP_FILE"
A file containing configuration details for local databases
.IP "\s-1DBSTAG_TEMPLATE_DIRS\s0" 4
.IX Item "DBSTAG_TEMPLATE_DIRS"
list of directories (separated by \fB:\fRs) to be searched when templates
are requested
.SH "COMMAND LINE ARGUMENTS"
.IX Header "COMMAND LINE ARGUMENTS"
.IP "\-h|help" 4
.IX Item "-h|help"
shows this page if no other arguments are given
.Sp
if a template is specified, gives template details
.Sp
if a db is specified, lists templates for that db
.Sp
use in conjunction with \-v for full descriptions
.IP "\-d|dbname \s-1DBNAME\s0" 4
.IX Item "-d|dbname DBNAME"
this is either a full \s-1DBI\s0 locator string (eg
\&\fBdbi:Pg:dbname=mydb;host=localhost\fR) or it can also be a shortened
\&\*(L"nickname\*(R", which is then looked up in the file pointed at by the
environment variable \fB\s-1DBSTAG_DBIMAP_FILE\s0\fR
.IP "\-u|user \s-1USER\s0" 4
.IX Item "-u|user USER"
database user identity
.IP "\-p|password \s-1PASS\s0" 4
.IX Item "-p|password PASS"
database password
.IP "\-f|file \s-1SQLFILE\s0" 4
.IX Item "-f|file SQLFILE"
this is a path to a file containing \s-1SQL\s0 that will be executed, as an
alternative to writing the \s-1SQL\s0 on the command line
.IP "\-n|nesting NESTING-EXPRESSIONS" 4
.IX Item "-n|nesting NESTING-EXPRESSIONS"
a bracketed expression indicating how to the resulting objects/XML
should be nested. See DBIx::DBStag for details.
.IP "\-t|template TEMPLATE-NAME" 4
.IX Item "-t|template TEMPLATE-NAME"
the name of a template; see above
.IP "\-wh|where WHERE-CLAUSE" 4
.IX Item "-wh|where WHERE-CLAUSE"
used to override the \s-1WHERE\s0 clause of the query; useful for combining
with templates
.Sp
You can append to an existing where clause by using the prefix \fB+\fR
.IP "\-s|select SELECT-COLS" 4
.IX Item "-s|select SELECT-COLS"
used to override the \s-1SELECT\s0 clause of the query; useful for combining
with templates
.IP "\-rows" 4
.IX Item "-rows"
sometimes it is preferable to return the results as a table rather
than xml or a similar nested structure. specifying \-rows will fetch a
table, one line per row, and columns separated by tabs
.IP "\-pre \s-1SQL\s0" 4
.IX Item "-pre SQL"
a piece of \s-1SQL\s0 is that is executed immediately before the main query; e.g.:
.Sp
.Vb 1
\&  \-pre "SET search_path=myschema,public"
.Ve
.IP "\-o|out \s-1FILE\s0" 4
.IX Item "-o|out FILE"
a file to output the results to
.IP "\-w|writer \s-1WRITER\s0" 4
.IX Item "-w|writer WRITER"
writer class; can be any perl class, or one of these
.RS 4
.IP "xml [default]" 4
.IX Item "xml [default]"
.PD 0
.IP "sxpr" 4
.IX Item "sxpr"
.PD
lisp S\-Expressions
.IP "itext" 4
.IX Item "itext"
indented text
.RE
.RS 4
.RE
.IP "\-color" 4
.IX Item "-color"
shows results in color (sxpr and itext only)
.IP "\-show" 4
.IX Item "-show"
will show the parse of the \s-1SQL\s0 statement