NAME¶
Bio::Tools::Run::BlastPlus - A wrapper for NCBI's blast+ suite
SYNOPSIS¶
Give standard usage here
DESCRIPTION¶
Blast+ is NCBI's successor to the "blastall" family of programs.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
http://redmine.open-bio.org/projects/bioperl/
AUTHOR - Mark A. Jensen¶
Email maj -at- fortinbras -dot- us
Describe contact details here
CONTRIBUTORS¶
Additional contributors names and emails here
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new¶
Title : new
Usage : my $obj = new Bio::Tools::Run::BlastPlus();
Function: Builds a new Bio::Tools::Run::BlastPlus object
Returns : an instance of Bio::Tools::Run::BlastPlus
Args :
program_version()¶
Title : program_version
Usage : $version = $bedtools_fac->program_version()
Function: Returns the program version (if available)
Returns : string representing location and version of the program
Note : this works around the WrapperBase::version() method conflicting with
the -version parameter for SABlast (good argument for not having
getter/setters for these)
package_version()¶
Title : package_version
Usage : $version = $bedtools_fac->version()
Function: Returns the BLAST+ package version (if available)
Returns : string representing BLAST+ package version (may differ from version())