NAME¶
Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of
analysis tools
SYNOPSIS¶
Do not use this object directly, it is recommended to access it and use it
through the
Bio::Tools::Run::AnalysisFactory module:
use Bio::Tools::Run::AnalysisFactory;
my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
->available_analyses;
print join ("\n", @$list) . "\n";
DESCRIPTION¶
All public methods are documented in the interface module
"Bio::Factory::AnalysisI".
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
http://redmine.open-bio.org/projects/bioperl/
AUTHOR¶
Martin Senger (martin.senger@gmail.com)
COPYRIGHT¶
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the
same terms as Perl itself.
DISCLAIMER¶
This software is provided "as is" without warranty of any kind.
SEE ALSO¶
- •
- http://www.ebi.ac.uk/soaplab/Perl_Client.html
BUGS AND LIMITATIONS¶
None known at the time of writing this.
APPENDIX¶
The main documentation details are in "Bio::Factory::AnalysisI".
_initialize¶
Usage : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
(_initialize is internally called from the 'new()' method)
Returns : nothing interesting
Args : This module recognises and uses following arguments:
-location
-httpproxy
-soap
Additionally, the main module Bio::Tools::Run::AnalysisFactory
recognises also:
-access
It populates calling object with the given arguments, and then - for some
attributes and only if they are not yet populated - it assigns some default
values.
This is an actual
new() method (except for the real object creation and
its blessing which is done in the parent class Bio::Root::Root in method
_create_object).
Note that this method is called always as an
object method (never as a
class method) - and that the object who calls this method may already
be partly initiated (from Bio::Tools::Run::AnalysisFactory::new method); so if
you need to do some tricks with the 'class invocation' you need to change
Bio::Tools::Run::AnalysisFactory
new method, not this one.
- -location
- A URL (also called an endpoint) defining where is located a Web
Service functioning for this object.
Default is "http://www.ebi.ac.uk/soaplab/services" (a service
running at European Bioinformatics Institute on top of most of the EMBOSS
analyses, and on top of few others).
For example, if you run your own Web Service using Java(TM) Apache Axis
toolkit, the location might be something like
"http://localhost:8080/axis/services".
- -httpproxy
- In addition to the location parameter, you may need to specify also
a location/URL of an HTTP proxy server (if your site requires one). The
expected format is "http://server:port". There is no default
value.
- -soap
- Defines your own SOAP::Lite object. Useful if you need finer-grained
access to many features and attributes of the wonderful Paul Kulchenko's
module.
VERSION and Revision¶
Usage : print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;
print $Bio::Tools::Run::AnalysisFactory::soap::Revision;