NAME¶
Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files
SYNOPSIS¶
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'data.nexml' -format => 'Nexml');
while( my $tree = $in->next_tree ) {
}
DESCRIPTION¶
This is a driver module for parsing tree data in a NeXML format. For more
information on NeXML, visit <
http://www.nexml.org>.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Chase Miller¶
Email chmille4@gmail.com
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
next_tree¶
Title : next_tree
Usage : my $tree = $treeio->next_tree
Function: Gets the next tree in the stream
Returns : L<Bio::Tree::TreeI>
Args : none
doc¶
Title : doc
Usage : $treeio->doc
Function: Returns the biophylo nexml document object
Returns : Bio::Phylo::Project
Args : none or Bio::Phylo::Project object
rewind¶
Title : rewind
Usage : $treeio->rewind
Function: Resets the stream
Returns : none
Args : none
write_tree¶
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Writes a tree onto the stream
Returns : none
Args : L<Bio::Tree::TreeI>