NAME¶
Bio::TreeIO::TreeEventBuilder - Build Bio::Tree::Tree's and
Bio::Tree::Node's from Events
SYNOPSIS¶
# internal use only
DESCRIPTION¶
This object will take events and build a Bio::Tree::TreeI compliant object makde
up of Bio::Tree::NodeI objects.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Jason Stajich¶
Email jason-at-bioperl.org
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new¶
Title : new
Usage : my $obj = Bio::TreeIO::TreeEventBuilder->new();
Function: Builds a new Bio::TreeIO::TreeEventBuilder object
Returns : Bio::TreeIO::TreeEventBuilder
Args :
treetype¶
Title : treetype
Usage : $obj->treetype($newval)
Function:
Returns : value of treetype
Args : newvalue (optional)
nodetype¶
Title : nodetype
Usage : $obj->nodetype($newval)
Function:
Returns : value of nodetype
Args : newvalue (optional)
SAX methods¶
start_document¶
Title : start_document
Usage : $handler->start_document
Function: Begins a Tree event cycle
Returns : none
Args : none
end_document¶
Title : end_document
Usage : my @trees = $parser->end_document
Function: Finishes a Phylogeny cycle
Returns : An array Bio::Tree::TreeI
Args : none
start_element¶
Title : start_element
Usage :
Function:
Example :
Returns :
Args : $data => hashref with key 'Name'
end_element¶
Title : end_element
Usage :
Function:
Returns : none
Args : $data => hashref with key 'Name'
in_element¶
Title : in_element
Usage :
Function:
Example :
Returns :
Args :
within_element¶
Title : within_element
Usage :
Function:
Example :
Returns :
Args :
characters¶
Title : characters
Usage : $handler->characters($text);
Function: Processes characters
Returns : none
Args : text string