NAME¶
Bio::Tools::PrositeScan - Parser for ps_scan result
SYNOPSIS¶
use Bio::Tools::PrositeScan;
my $factory = Bio::Tools::PrositeScan->new(
-file => 'out.PrositeScan'
);
while(my $match = $factory->next_prediction){
# $match is of Bio::SeqFeature::FeaturePair
my $q_id = $fatch->feature1->seq_id;
my $h_id = $fatch->feature2->seq_id;
}
DESCRIPTION¶
This is the parser of the output of ps_scan program. It takes either a file
handler or a file name, and returns a Bio::SeqFeature::FeaturePair object.
AUTHOR¶
Juguang Xiao, juguang@tll.org.sg
new¶
Title : new
Usage : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan');
Bio::Tools::PrositeScan->new(-fh => \*FH);
Returns : L<Bio::Tools::PrositeScan>
next_prediction¶
Title : new
Usage :
while($result = $factory->next_prediction){
;
}
Returns : a Bio::SeqFeature::FeaturePair object