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.\" ========================================================================
.\"
.IX Title "Bio::SearchIO::Writer::BSMLResultWriter 3pm"
.TH Bio::SearchIO::Writer::BSMLResultWriter 3pm "2014-07-13" "perl v5.18.2" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
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.SH "NAME"
Bio::SearchIO::Writer::BSMLResultWriter \- BSML output writer
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.Vb 8
\&  use Bio::SearchIO;
\&  my $in = Bio::SearchIO\->new(\-file   => \*(Aqresult.blast\*(Aq,
\&                             \-format => \*(Aqblast\*(Aq);
\&  my $out = Bio::SearchIO\->new(\-output_format  => \*(AqBSMLResultWriter\*(Aq,
\&                              \-file           => ">result.bsml");
\&  while( my $r = $in\->next_result ) {
\&    $out\->write_result($r);
\&  }
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This is a writer to produce \s-1BSML\s0 for a search result.
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Support"
.IX Subsection "Support"
Please direct usage questions or support issues to the mailing list:
.PP
\&\fIbioperl\-l@bioperl.org\fR
.PP
rather than to the module maintainer directly. Many experienced and 
reponsive experts will be able look at the problem and quickly 
address it. Please include a thorough description of the problem 
with code and data examples if at all possible.
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR \- Jason Stajich"
.IX Header "AUTHOR - Jason Stajich"
Email jason-at-bioperl-dot-org
.SH "APPENDIX"
.IX Header "APPENDIX"
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
.SS "new"
.IX Subsection "new"
.Vb 5
\& Title   : new
\& Usage   : my $obj = Bio::SearchIO::Writer::BSMLResultWriter\->new();
\& Function: Builds a new Bio::SearchIO::Writer::BSMLResultWriter object 
\& Returns : an instance of Bio::SearchIO::Writer::BSMLResultWriter
\& Args    :
.Ve
.SS "to_string"
.IX Subsection "to_string"
.Vb 10
\& Purpose   : Produces data for each Search::Result::ResultI in a string.
\&           : This is an abstract method. For some useful implementations,
\&           : see ResultTableWriter.pm, HitTableWriter.pm, 
\&           : and HSPTableWriter.pm.
\& Usage     : print $writer\->to_string( $result_obj, @args );
\& Argument  : $result_obj = A Bio::Search::Result::ResultI object
\&           : @args = any additional arguments used by your implementation.
\& Returns   : String containing data for each search Result or any of its
\&           : sub\-objects (Hits and HSPs).
\& Throws    : n/a
.Ve